Job Description P45508 Confidence 3.23% Date Thu Jan 5 12:02:51 GMT 2012 Rank 92 Aligned Residues 207 % Identity 8% Template d1a0tp_ SCOP info Transmembrane beta-barrels Porins Maltoporin-like Resolution 2.40

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1028	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	W	M	L	G	I	V	G	G	Y	S	D	N	Q	G	D	S	R	S	N	M	T	G	T	R	A	D	N	Q	N	H	G	Y	A	V	G	L	T	S	S	W	F	Q	H	G	N	Q	K	Q	G	A	W	L	D	S	W	L	Q	Y	A	W	F	S	N	D	V	S	E	Q	E	D	G	T	D	H	Y	H	S	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	P	L	Q	M	M	V	S	G	L	R	A	K	D	N	D	E	R	K	D	S	N	G	N	L	A	K	G	D	A	A	N	T	G	V	H	A	L	L	G	L	H	N	D	S	F	Y	G	L	R	D	G	S	S	K	T	A	L	L	Y	G	H	G	L	G	A	E	V	K	G	I	G	S	D	G	A	L	R	P	G
Template Known Secondary structure		T	T											T	T	G	G	G		B		S	S	S	S	B	S		S	S			S														S	T	T	S	S														T	T		S		S	B	T	T			T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		1108	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	I	A	S	L	E	A	G	Y	Q	W	L	P	G	R	G	V	V	I	E	P	Q	A	Q	V	I	Y	Q	G	V	Q	Q	D	D	F	T	A	A	N	R	A	R	V	S	Q	S	Q	G	D	D	I	Q	T	R	L	G	L	H	S	E	W	R	T	A	V	H	V	I	P	T	L	D	L	N	Y	Y	H	D	P
Query Conservation
Alig confidence																								.	.																.	.	.	.	.	.	.	.	.	.																															.
Template Conservation																								.	.																.	.	.	.	.	.	.	.	.	.																															.
Template Sequence		A	D	T	W	R	I	A	S	Y	G	T	T	P	L	S	E	N	W	S	V	A	P	.	.	A	M	L	A	Q	R	S	K	D	R	Y	A	D	G	D	.	.	.	.	.	.	.	.	.	.	S	Y	Q	W	A	T	F	N	L	R	L	I	Q	A	I	N	Q	N	F	A	L	A	Y	E	G	S	Y	Q	Y	M	.
Template Known Secondary structure															S	S	S	S						.	.									S	S	S	S	T	T		.	.	.	.	.	.	.	.	.	.															S	S	S	S													.
Template Predicted Secondary structure																								.	.																.	.	.	.	.	.	.	.	.	.																															.
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.			.	.	.	.	360	.	.	.	.	.	.	.	.	.	370											.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		1188	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220									.	.	.	.	.	.	.	.	.																1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	S	T	E	I	E	E	D	G	S	T	I	S	D	D	A	V	K	Q	R	G	E	I	K	V	G	V	T	G	N	I	S	Q	.	.	.	.	.	.	.	.	R	V	S	L	R	G	S	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	Q	K	G	S	D	D	F	A	Q	T	A	G	F	L
Query Conservation																																			.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.																															.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	D	L	K	P	E	G	Y	N	D	R	Q	A	V	N	G	S	F	Y	K	L	T	F	A	P	T	F	K	V	G	S	I	G	D	F	F	S	R	P	E	I	R	F	Y	T	S	W	M	D	W	S	K	K	L	N	N	Y	A	S	D	D	A	L	G	S	D	G	F	N	S	G	G	E	W	S	F	G	V
Template Known Secondary structure		.	.	.					T	T	G	G	G																			S	S		T	T		T	T																G	G	G	G	G	S		S	S	S	S	T	T	B	T	T	B		S	S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
		1245	.	.	.	.	1250
Predicted Secondary structure
Query SS confidence
Query Sequence		S	M	T	V	K	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	M	E	T	W	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		478	.	480	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions