Job Description P45508 Confidence 99.40% Date Thu Jan 5 12:02:51 GMT 2012 Rank 10 Aligned Residues 587 % Identity 13% Template c3syjA_ PDB info PDB header:cell adhesion Chain: A: PDB Molecule:adhesion and penetration protein autotransporter; PDBTitle: crystal structure of the haemophilus influenzae hap adhesin Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	L	I	T	K	T	G	S	G	D	L	V	L	N	A	D	N	N	D	F	T	G	E	M	Q	I	E	N	G	E	V	T	L	G	R	S	N	S	L	M	N	V	G	D	T	H	C	Q	D	D	P	Q	D	C	Y	G	L	T	I	G	S	I	D	Q	Y	Q	N	Q	A	E	L	N	V	G	S	T	Q	Q	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	L	Y	F	M	D	Q	K	Q	G	S	L	I	F	A	S	D	I	N	Q	G	A	G	G	L	Y	F	E	G	N	F	T	V	S	P	N	S	N	Q	T	W	Q	G	A	G	I	H	V	S	E	N	S	T	V	T	W	K	V	N	G	V	E	H	D	R	L	S	K	I	G	K	G	T	L	H	V	Q	A	K	G
Template Known Secondary structure								S	S							S	S					T	T							S							S	S	S		B			S	S						T	T								B			T	T							S	S	S							B	S
Template Predicted Secondary structure
Template SS confidence
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	H	A	L	T	G	F	Q	N	G	T	L	N	I	D	A	G	G	N	V	T	V	N	Q	G	S	F	A	G	I	I	E	G	A	G	Q	L	T	I	A	Q	N	G	S	Y	V	L	A	G	A	Q	S	M	A	L	T	G	D	I	V	V	D	D	G	A	V	L	S	L	E	G	D	A	A	D	L	T	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	N	K	G	S	I	S	V	G	D	G	K	V	I	L	E	Q	Q	A	D	D	Q	G	N	K	Q	A	F	S	E	I	G	L	V	S	G	R	G	T	V	Q	L	N	D	D	K	Q	F	D	T	D	K	F	Y	F	G	F	R	G	G	R	L	D	L	N	G	H	S	L	T	F	K	R	I	Q	N	T	D	E	G
Template Known Secondary structure		B																	B			T	T				B	S		S														S	S	S	S		S		G	G	G					T	T							T	T						S	S					S	T	T
Template Predicted Secondary structure
Template SS confidence
		444	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.
		485	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.				.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.
Predicted Secondary structure																																											.	.	.
Query SS confidence																																											.	.	.
Query Sequence		Q	D	D	P	Q	S	I	V	L	N	G	G	V	L	D	L	S	D	F	S	T	W	Q	S	G	T	S	Y	N	D	G	L	E	V	S	G	S	S	G	T	V	.	.	.	I	G	S	Q	D	V	V	D	L	A	G	G	D	N	L	H	I	G	G	D	G	K	D	G	V	Y	V	V	V	D	A	S	D	G	Q	V
Query Conservation																																											.	.	.
Alig confidence																																											.	.	.
Template Conservation
Template Sequence		A	M	I	V	N	H	N	T	T	Q	A	A	N	V	T	I	T	G	N	E	S	I	V	L	P	N	G	N	N	I	N	K	L	D	Y	R	K	E	I	A	Y	N	G	W	F	G	E	T	D	K	N	K	H	N	G	R	L	N	L	I	Y	K	P	T	T	E	D	R	T	L	L	L	S	G	G	T	N	L	K	G
Template Known Secondary structure									S	S	S										S			S				S	S				G	G	G	G		S						S			S				T	T	S												S	S	S	S							S					S	S
Template Predicted Secondary structure
Template SS confidence
		524	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.
		562	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	A	N	N	N	S	Y	L	G	T	T	Q	I	A	S	G	T	L	M	V	S	D	N	S	Q	L	G	D	T	H	Y	N	R	Q	V	I	F	T	D	K	Q	Q	E	S	V	M	E	I	T	S	D	V	D	T	R	S	D	A	A	G	H	G	R	D	I	E	M	R	A	D	G	E	V	A	V	D	A	G	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	T	Q	T	K	G	K	L	F	F	S	G	R	P	T	P	H	A	Y	N	H	L	N	K	R	W	S	E	M	E	G	I	P	Q	G	E	I	V	W	D	H	D	W	I	N	R	T	F	K	A	E	N	F	Q	I	K	G	G	S	A	V	V	S	R	N	V	S	S	I	E	G	N	W	T	V	S	N	N	A
Template Known Secondary structure							S	S														B											T			S	B					T	T																S	S						S	S												T	T
Template Predicted Secondary structure
Template SS confidence
		604	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.
		642	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	Q	W	G	A	L	M	A	D	S	S	G	Q	H	Q	D	E	G	S	T	L	T	K	T	G	A	G	T	L	E	L	T	A	S	G	T	T	Q	S	A	V	R	V	E	E	G	T	L	K	G	D	V	A	D	I	L	P	Y	A	S	S	L	W	V	G	D	G	A	T	F	V	T	G	A	D	Q	D	I	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	A	T	F	G	V	V	P	N	Q	Q	N	T	I	C	T	R	S	D	W	T	G	L	T	T	C	Q	K	V	D	L	T	D	T	K	V	I	N	S	I	P	K	T	Q	I	N	G	S	I	N	L	T	D	N	A	T	A	N	V	K	G	L	A	K	L	N	G	N	V	T	L	T	N	H	S	Q	F	T	L	S
Template Known Secondary structure									T	T	S									T	T	T																			S							S						T	T							S	S					S						T	T
Template Predicted Secondary structure
Template SS confidence
		684	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.
		722	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	D	A	I	S	S	G	T	I	D	I	S	D	G	T	V	L	R	L	T	G	Q	D	T	S	V	A	L	N	A	S	L	F	N	G	D	G	T	L	V	N	A	T	D	G	V	T	L	T	G	E	L	N	T	N	L	E	T	D	S	L	T	Y	L	S	N	V	T	V	N	G	N	L	T	N	T	S	G	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	N	A	T	Q	I	G	N	I	R	L	S	D	N	S	T	A	T	V	D	N	A	N	L	N	G	N	V	H	L	T	D	S	A	Q	F	S	L	K	N	S	H	F	S	H	Q	I	Q	G	D	K	G	T	T	V	T	L	E	N	A	T	W	T	M	P	S	D	T	T	L	Q	N	L	T	L	N	N	S	T	I
Template Known Secondary structure		T	T					S						T	T							S	S				S						T	T							S					S						T	T							S							S					S
Template Predicted Secondary structure
Template SS confidence
		764	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.
		802	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	L	Q	N	G	V	A	G	D	T	L	T	V	N	G	D	Y	T	G	G	G	T	L	L	L	D	S	E	L	N	G	D	D	S	V	S	D	Q	L	V	M	N	G	N	T	A	G	N	T	T	V	V	V	N	S	I	T	G	I	G	E	P	T	S	T	G	I	K	V	V	D	F	A	A	D	P	T	Q	F
Query Conservation
Alig confidence																																					.	.																										.																	.
Template Conservation																																					.	.																										.																	.
Template Sequence		T	L	N	S	A	Y	S	R	F	N	T	L	T	V	N	G	K	L	S	G	Q	G	T	F	Q	F	T	S	S	L	F	G	Y	K	S	.	.	D	K	L	K	L	S	N	D	A	E	G	D	Y	I	L	S	V	R	N	T	G	K	E	P	E	.	T	L	E	Q	L	T	L	V	E	S	K	D	N	Q	P	L	.
Template Known Secondary structure			S		G	G	G										S														T	T	T	T			.	.							T	T													S				S	.	S										S	S	S	S			.
Template Predicted Secondary structure																																					.	.																										.																	.
Template SS confidence
		844	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.			.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.		.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.
		882	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	N	N	A	Q	F	S	L	A	G	S	G	Y	V	N	M	G	A	Y	D	Y	T	L	V	E	D	N	N	D	W	Y	L	R	S	Q
Query Conservation
Alig confidence												.
Template Conservation												.
Template Sequence		S	D	K	L	K	F	T	L	E	N	.	D	H	V	D	A	G	A	L	R	Y	K	L	V	K	N	D	G	E	F	R	L	H	N	P
Template Known Secondary structure			T	T						T	T	.	S					T	T									T	T
Template Predicted Secondary structure												.
Template SS confidence
		943	.	.	.	.	.	.	950	.	.		.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.