Job Description P45508 Confidence 100.00% Date Thu Jan 5 12:02:51 GMT 2012 Rank 3 Aligned Residues 241 % Identity 22% Template c3qq2C_ PDB info PDB header:membrane protein/protein transport Chain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka Resolution 3.00 Å

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		983	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	Q	T	L	N	L	R	V	I	G	G	D	Y	H	Y	T	A	A	G	Q	L	A	Q	H	E	D	T	S	T	V	Q	L	S	G	D	L	F	S	G	R	W	G	T	D	G	E	W	M	L	G	I	V	G	G	Y	S	D	N	Q	G	D	S	R	S	N	M	T	G	T	R	A	D	N	Q	N	H	G	Y	A
Query Conservation
Alig confidence																				.	.	.	.															.	.																											.	.	.	.	.
Template Conservation																				.	.	.	.															.	.																											.	.	.	.	.
Template Sequence		D	A	G	G	P	W	A	R	T	F	S	E	R	Q	Q	I	S	N	.	.	.	.	A	Y	D	Q	T	V	S	G	L	E	I	G	L	D	.	.	R	G	W	S	A	S	G	G	R	W	Y	A	G	G	L	L	G	Y	T	Y	A	D	R	T	Y	P	.	.	.	.	.	G	D	G	G	G	K	V	K	G	L	H
Template Known Secondary structure																				.	.	.	.															.	.						T	T																		B	T	.	.	.	.	.	T	T	B
Template Predicted Secondary structure																				.	.	.	.															.	.																											.	.	.	.	.
Template SS confidence
		745	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.					.	.	.	.	.	.	.	770	.	.	.	.	.	.			.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.						.	.	.	.	.	.	.	810	.	.	.
		1063	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.					.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.
Query SS confidence																																			.	.	.	.
Query Sequence		V	G	L	T	S	S	W	F	Q	H	G	N	Q	K	Q	G	A	W	L	D	S	W	L	Q	Y	A	W	F	S	N	D	V	S	.	.	.	.	E	Q	E	D	G	T	D	H	Y	H	S	S	G	I	I	A	S	L	E	A	G	Y	Q	W	L	P	G	R	G	V	V	I	E	P	Q	A	Q	V	I	Y	Q	G	V
Query Conservation																																			.	.	.	.
Alig confidence										.	.	.	.																						.	.	.	.
Template Conservation										.	.	.	.
Template Sequence		V	G	G	Y	A	A	Y	V	.	.	.	.	G	D	G	G	Y	Y	L	D	T	V	L	R	L	G	R	Y	D	Q	Q	Y	N	I	A	G	T	D	G	G	R	V	T	A	D	Y	R	T	S	G	A	A	W	S	L	E	G	G	R	R	F	E	L	P	N	D	W	F	A	E	P	Q	A	E	V	M	L	W	R	T
Template Known Secondary structure										.	.	.	.		S	S	S	B																				S	S	S																				B					G	G	G
Template Predicted Secondary structure										.	.	.	.
Template SS confidence
		818	.	820	.	.	.	.	.					.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.
		1139	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170					.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.
Predicted Secondary structure																																		.	.	.	.
Query SS confidence																																		.	.	.	.
Query Sequence		Q	Q	D	D	F	T	A	A	N	R	A	R	V	S	Q	S	Q	G	D	D	I	Q	T	R	L	G	L	H	S	E	W	R	.	.	.	.	T	A	V	H	V	I	P	T	L	D	L	N	Y	Y	H	D	P	H	S	T	E	I	E	E	D	G	S	T	I	S	D	D	A	V	K	Q	R	G	E	I	K	V	G	V
Query Conservation																																		.	.	.	.
Alig confidence																																		.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	G	K	R	Y	R	A	S	N	G	L	R	V	K	V	D	A	N	T	A	T	L	G	R	L	G	L	R	F	G	R	R	I	A	L	A	G	G	N	I	V	Q	P	Y	A	R	L	G	W	T	Q	E	.	.	.	.	.	.	.	.	.	.	.	.	F	K	S	T	G	R	H	G	R	V	E	L	G	A	G	V
Template Known Secondary structure									S	S	S																										T	T	S															.	.	.	.	.	.	.	.	.	.	.	.							B
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		894	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.													.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.
		1215	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	N	I	S	Q	R	V	S	L	R	G	S	V	A	W	Q	K	G	S	D	D	F	A	Q	T	A	G	F	L	S	M	T	V	K	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	A	A	L	G	K	G	H	N	L	Y	A	S	Y	E	Y	A	A	G	D	R	I	N	I	P	W	S	F	H	A	G	Y	R	Y	S	F
Template Known Secondary structure						G	G	G	B												S	S													B
Template Predicted Secondary structure
Template SS confidence
		975	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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