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Job DescriptionP45508
Confidence98.91%DateThu Jan 5 12:02:51 GMT 2012
Rank14Aligned Residues136
% Identity13%Templatec3nb3C_
PDB info PDB header:virusChain: C: PDB Molecule:outer membrane protein a; PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components
Resolution19.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1073......1080.........1090.........1100.........1110.........1120.........1130.........1140.........1150..
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Query Sequence  GNQKQGAWLDSWLQYAWFSNDVSEQEDGTDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAANRARVS
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Template Sequence  APKDNTWYTGAKLGWSQHENK. . . . . . . . . . . . . . . LGAGAFGGYQVN. . PYVGFE. . . . MGYDWLGRMPYAY. . . . . . .
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   1........10.........20. ........30... ...... 40.........50..
 
   1153......1160.........1170.........1180.........1190.........1200.........1210.........1220.........1230..
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Query Sequence  QSQGDDIQTRLGLHSEWRTAVHVIPTLDLNYYHDPHSTEIEEDGSTISDDAVKQRGEIKVGVTGNISQRVSLRGSVAWQK
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Template Sequence  . . . . KAQGVQLTAKLGYPITDDLDIYTRLGGMVWR. . . ADTYSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWT.
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   73......80.........90.........100... ......110.........120.........130.........140....
 
   1233......1240.........1250
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Query Sequence  GSDDFAQTAGFLSMTVKW
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Template Sequence  . . . . . . NGMLSLGVSYRF
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   145....150......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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