Job Description P45508 Confidence 4.00% Date Thu Jan 5 12:02:51 GMT 2012 Rank 74 Aligned Residues 133 % Identity 11% Template c3jtyB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:benf-like porin; PDBTitle: crystal structure of a benf-like porin from pseudomonas fluorescens2 pf-5 Resolution 2.58 Å

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		1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	A	S	L	E	A	G	Y	Q	W	L	P	G	R	G	V	V	I	E	P	Q	A	Q	V	I	Y	Q	G	V	Q	Q	D	D	F	T	A	A	N	R	A	R	V	S	Q	S	Q	G	D	D	I	Q	T	R	L	G	L	H	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.													.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.													.	.	.	.	.	.	.
Template Sequence		Q	Q	F	I	N	L	I	H	S	Q	P	L	G	D	.	W	T	L	G	A	N	L	G	F	F	Y	G	.	.	.	.	.	.	.	K	E	D	G	S	A	R	A	G	D	M	E	N	R	T	W	S	G	L	F	S	A	K	Y	G	G	N	T	F	Y	V	G	L	Q	K	L	T	G	D	S	A	W	M	R	V	N
Template Known Secondary structure														S	S	.													.	.	.	.	.	.	.				T	T		T	T																	T	T													S	S					B	T
Template Predicted Secondary structure																.													.	.	.	.	.	.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.								.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
																1168	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.		.	.	.	1190	.	.	.	.								.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.					1220	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.									.	.	.	.	.	.	.																										.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.									.	.	.	.	.	.	.																										.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	W	R	T	A	V	H	V	I	P	T	L	D	L	N	Y	Y	H	D	.	P	H	S	T	E	I	E	E	.	.	.	.	.	.	.	D	G	S	T	I	S	D	D	A	V	K	Q	R	G	E	I	K	V	G	V	T	G	N	I	S	.	.	.	.	Q	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.									.	.	.	.	.	.	.																										.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.									.	.	.	.	.	.	.																										.	.	.	.
Template Conservation
Template Sequence		G	T	S	G	G	T	L	A	N	D	S	Y	N	A	S	Y	D	N	A	K	E	K	S	W	Q	V	R	H	D	Y	N	F	A	A	L	G	V	P	G	L	T	L	M	N	R	Y	I	S	G	S	N	V	H	T	A	T	V	S	D	G	K	E	W	G	R	E	S	E	V	A	Y	T	V	Q	S	G	T	L	K	N
Template Known Secondary structure		T				T	T	S	T	T			S	S					S	T	T												T	T	T	T	T		T	T																T	T																			S	S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
		1222	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240		.	.	.	.	.	.	.	.	.	1250
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		V	S	L	R	G	S	V	A	W	Q	K	G	S	D	D	F	A	Q	T	.	A	G	F	L	S	M	T	V	K	W
Query Conservation																					.
Alig confidence																					.
Template Conservation
Template Sequence		L	N	L	K	W	R	N	S	T	M	R	R	D	F	S	N	N	E	F	D	E	N	R	L	I	I	S	Y	P	L
Template Known Secondary structure														S	S		S
Template Predicted Secondary structure
Template SS confidence
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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