Job Description P45508 Confidence 99.59% Date Thu Jan 5 12:02:51 GMT 2012 Rank 9 Aligned Residues 583 % Identity 14% Template c3h09B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:immunoglobulin a1 protease; PDBTitle: the structure of haemophilus influenzae iga1 protease Resolution 1.75 Å

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		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.				.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure																																																								.	.	.
Query SS confidence																																																								.	.	.
Query Sequence		T	G	L	I	T	K	T	G	S	G	D	L	V	L	N	A	D	N	N	D	F	T	G	E	M	Q	I	E	N	G	E	V	T	L	G	R	S	N	S	L	M	N	V	G	D	T	H	C	Q	D	D	P	Q	D	.	.	.	C	Y	G	L	T	I	G	S	I	D	Q	Y	Q	N	Q	A	E	L	N	V	G	S	T
Query Conservation																																																								.	.	.
Alig confidence																																																								.	.	.
Template Conservation
Template Sequence		G	K	S	V	T	L	R	G	S	G	T	L	T	L	N	N	N	I	D	Q	G	A	G	G	L	F	F	E	G	D	Y	E	V	K	G	T	S	D	S	T	T	W	K	G	A	G	V	S	V	A	D	G	K	T	V	T	W	K	V	H	N	P	K	S	D	R	L	A	K	I	G	K	G	T	L	I	V	E	G	K
Template Known Secondary structure																S	S					T	T														S	S	T	T		B			S	S						T	T								B			T	T							S	S	S							B
Template Predicted Secondary structure
Template SS confidence
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.						.	.	.	.
Predicted Secondary structure																																																																									.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.
Query Sequence		Q	Q	T	F	V	H	A	L	T	G	F	Q	N	G	T	L	N	I	D	A	G	G	N	V	T	V	N	Q	G	S	F	A	G	I	I	E	G	A	G	Q	L	T	I	A	Q	N	G	S	Y	V	L	A	G	A	Q	S	M	A	L	T	G	D	I	V	V	D	D	G	A	V	L	.	.	.	.	.	S	L	E	G
Query Conservation																																																																									.	.	.	.	.
Alig confidence																																																																									.	.	.	.	.
Template Conservation
Template Sequence		G	E	N	K	G	S	L	K	V	G	D	G	T	V	I	L	K	Q	Q	A	D	A	N	N	K	V	K	A	F	S	Q	V	G	I	V	S	G	R	S	T	V	V	L	N	D	D	K	Q	V	D	P	N	S	I	Y	F	G	F	R	G	G	R	L	D	A	N	G	N	N	L	T	F	E	H	I	R	N	I	D	D
Template Known Secondary structure		S	B									S								B			T	T				B	S		S						S	S							S	S	T	T	S	S		G	G	G					T	T							T	T						S					S	S	T
Template Predicted Secondary structure
Template SS confidence
		466	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.
		477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	A	D	L	T	A	L	Q	D	D	P	Q	S	I	V	L	N	G	G	V	L	D	L	S	D	F	S	T	W	Q	S	G	T	S	Y	N	D	G	L	E	V	S	G	S	S	G	T	V	I	G	S	Q	D	V	V	D	L	A	G	G	D	N	L	H	I	G	G	D	G	K	D	G	V	Y	V	V	V	D	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	A	R	L	V	N	H	N	T	S	K	T	S	T	V	T	I	T	G	E	S	L	I	T	D	P	N	T	I	T	P	Y	N	I	D	A	P	D	E	D	N	P	Y	A	F	R	R	I	K	D	G	G	Q	L	Y	L	N	L	E	N	Y	T	Y	Y	A	L	R	K	G	A	S	T	R	S	E	L	P	K	N	S
Template Known Secondary structure		T								S	S	S															G	G	G											S	S		T	T	S						T	T		S	S				T	T	T	T							T	T			T	T	S				S	S	T
Template Predicted Secondary structure
Template SS confidence
		546	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.
		557	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	G	Q	V	S	L	A	N	N	N	S	Y	L	G	T	T	Q	I	A	S	G	T	L	M	V	S	D	N	S	Q	L	G	D	T	H	Y	N	R	Q	V	I	F	T	D	K	Q	Q	E	S	V	M	E	I	T	S	D	V	D	T	R	S	D	A	A	G	H	G	R	D	I	E	M	R	A	D	G	E	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E	S	N	E	N	W	L	Y	M	G	K	T	S	D	E	A	K	R	N	V	M	N	H	I	N	N	E	R	M	N	G	F	N	G	Y	F	G	E	E	E	G	K	N	N	G	N	L	N	V	T	F	K	G	K	S	E	Q	N	R	F	L	L	T	G	G	T	N	L	N	G	D	L	K	V	E	K	G	T	L
Template Known Secondary structure		T				S	S						S	S																T				B		S			S			T	T	S												S	S	T	T							S					S	S							S
Template Predicted Secondary structure
Template SS confidence
		626	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.
		637	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		V	D	A	G	V	D	T	Q	W	G	A	L	M	A	D	S	S	G	Q	H	Q	D	E	G	S	T	L	T	K	T	G	A	G	T	L	E	L	T	A	S	G	T	T	Q	S	A	V	R	V	E	E	G	T	L	K	G	D	V	A	D	I	L	P	Y	A	S	S	L	W	V	G	D	G	A	T	F	V	T	G	.
Query Conservation																																																																																	.
Alig confidence																																																																																	.
Template Conservation
Template Sequence		F	L	S	G	R	P	T	P	H	A	R	D	I	A	G	I	S	S	T	K	K	D	Q	H	F	A	E	N	N	E	V	V	V	E	D	D	W	I	N	R	N	F	K	A	T	N	I	N	V	T	N	N	A	T	L	Y	S	G	R	N	V	A	N	I	T	S	N	I	T	A	S	D	N	A	K	V	H	I	G	Y
Template Known Secondary structure														T	T	S				S				G	G	G		G	G	G					T	T																T	T							T	T												T	T						S	B
Template Predicted Secondary structure
Template SS confidence
		706	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.
				716	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.					.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																																																.	.	.	.
Query SS confidence		.	.																																																.	.	.	.
Query Sequence		.	.	A	D	Q	D	I	Q	S	I	D	A	I	S	S	G	T	I	D	I	S	D	G	T	V	L	R	L	T	G	Q	D	T	S	V	A	L	N	A	S	L	F	N	G	D	G	T	L	V	.	.	.	.	N	A	T	D	G	V	T	L	T	G	E	L	N	T	N	L	E	T	D	S	L	T	Y	L	S	N	V
Query Conservation		.	.																																																.	.	.	.
Alig confidence		.	.																																																.	.	.	.
Template Conservation
Template Sequence		K	A	G	D	T	V	C	V	R	S	D	Y	T	G	Y	V	T	C	T	T	D	K	L	S	D	K	A	L	N	S	F	N	A	T	N	V	S	G	N	V	N	L	S	G	N	A	N	F	V	L	G	K	A	N	L	F	G	T	I	S	G	T	G	N	S	Q	V	R	L	T	E	N	S	H	W	H	L	T	G	D
Template Known Secondary structure			T	T								T	T	T								S								T	T	S							S						T	T						S	B					S						T	T							T	T						S	S
Template Predicted Secondary structure
Template SS confidence
		786	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.
		790	.	.	.	.	.	.	.	.	.	800	.	.	.	.						.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.
Query SS confidence																	.	.	.	.	.
Query Sequence		T	V	N	G	N	L	T	N	T	S	G	A	V	S	L	.	.	.	.	.	Q	N	G	V	A	G	D	T	L	T	V	N	G	D	Y	T	G	G	G	T	L	L	L	D	S	E	L	N	G	D	D	S	V	S	D	Q	L	V	M	N	G	N	T	A	G	N	T	T	V	V	V	N	S	I	T	G	I	G	E	P
Query Conservation																	.	.	.	.	.
Alig confidence																	.	.	.	.	.																																	.	.																						.	.
Template Conservation																																																						.	.																						.	.
Template Sequence		S	N	V	N	Q	L	N	L	D	K	G	H	I	H	L	N	A	Q	N	D	A	N	K	V	T	T	Y	N	T	L	T	V	N	S	L	S	G	N	G	S	F	Y	Y	L	T	D	L	S	N	K	Q	G	.	.	D	K	V	V	V	T	K	S	A	T	G	N	F	T	L	Q	V	A	D	K	T	.	.	G	E	P
Template Known Secondary structure																S	S	S				T	T	S																								G	G	G	T			.	.																				S	S	.	.
Template Predicted Secondary structure																																																						.	.																						.	.
Template SS confidence
		866	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.			.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.			.	940	.
		865	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.		.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		T	S	T	G	I	K	V	V	D	F	A	A	D	P	T	Q	F	Q	N	N	A	Q	F	S	L	A	G	S	.	G	Y	V	N	M	G	A	Y	D	Y	T	L	V	E	D	N	N	D	W	Y	L	R	S	Q
Query Conservation																														.
Alig confidence																	.	.	.	.	.									.
Template Conservation																	.	.	.	.	.
Template Sequence		T	K	N	E	L	T	L	F	D	A	S	N	A	T	R	.	.	.	.	.	N	N	L	N	V	S	L	V	G	N	T	V	D	L	G	A	W	K	Y	K	L	R	N	V	N	G	R	Y	D	L	Y	N	P
Template Known Secondary structure			S									T	T	S	B		.	.	.	.	.	T	T										S	S	G	G	G									T	T
Template Predicted Secondary structure																	.	.	.	.	.
Template SS confidence
		942	.	.	.	.	.	.	.	950	.	.	.	.	.	.						.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.