Job Description P45508 Confidence 97.28% Date Thu Jan 5 12:02:51 GMT 2012 Rank 23 Aligned Residues 155 % Identity 13% Template c2wjqA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel PDBTitle: nanc porin structure in hexagonal crystal form. Resolution 2.00 Å

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		1075	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	K	Q	G	A	W	L	D	S	W	L	Q	Y	A	W	F	S	N	D	V	S	E	Q	E	D	G	T	D	H	Y	H	S	S	G	I	I	A	S	L	E	A	G	Y	Q	W	L	P	G	R	G	V	V	I	E	P	Q	A	Q	V	I	Y	Q	G	V	Q	Q	D	D	F	T	A	A	N	R	A	R	V	S	Q	S
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template Sequence		W	Q	N	G	W	W	A	S	M	E	S	N	T	W	N	T	I	N	D	V	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	V	N	Y	A	I	K	L	D	D	Q	W	T	V	R	P	G	M	L	T	H	F	S	.	.	.	S	N	G	T	R	Y	G	P	Y	V	K	L	S	W	D
Template Known Secondary structure			T	T	S																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S	S	S	S													.	.	.	T	T
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.																		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70				.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		1155	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.															.	.	.	.	.	.	1180	.	.	.	.	.	.	.					.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Query Sequence		Q	G	D	D	I	Q	T	R	L	G	L	H	S	E	W	R	T	A	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	V	I	P	T	L	D	L	N	Y	Y	H	D	P	.	.	.	.	H	S	T	E	I	E	E	D	G	S	T	I	S	D	D	A	V	K	Q	R	G	E	I	K	V	G	V	T	G
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Conservation
Template Sequence		A	T	K	D	L	N	F	G	I	R	Y	R	Y	D	W	K	A	Y	R	Q	Q	D	L	S	G	D	M	S	R	D	N	V	H	R	W	D	G	Y	V	T	Y	H	I	N	S	D	F	T	F	A	W	Q	T	T	L	Y	S	K	Q	N	D	Y	R	Y	A	N	H	K	K	W	A	T	E	N	A	F	V	L	Q	Y
Template Known Secondary structure			S	S	S													S	S					T	T	S																			S	S	S													S	S	S				T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		1217	.	.	1220	.	.	.	.	.	.	.	.	.							1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.
Query Sequence		N	I	S	Q	R	V	S	L	R	G	S	V	A	.	.	.	.	.	.	W	Q	K	G	S	D	D	F	A	Q	T	A	G	F	L	S	M	T	V	K
Query Conservation															.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.
Template Conservation
Template Sequence		H	M	T	P	D	I	T	P	Y	I	E	Y	D	Y	L	D	R	Q	G	V	Y	N	G	R	D	N	L	S	E	N	S	Y	R	I	G	V	S	F	K
Template Known Secondary structure			S	B	T	T												S					T	T
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions