Job Description P45508 Confidence 99.04% Date Thu Jan 5 12:02:51 GMT 2012 Rank 12 Aligned Residues 166 % Identity 11% Template c2k0lA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles. Resolution UNK

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		1075	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.				.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.
Predicted Secondary structure																						.	.	.
Query SS confidence																						.	.	.
Query Sequence		Q	K	Q	G	A	W	L	D	S	W	L	Q	Y	A	W	F	S	N	D	V	.	.	.	S	E	Q	E	D	G	T	D	H	Y	H	S	S	G	I	I	A	S	L	E	A	G	Y	Q	W	L	P	G	R	G	V	V	I	E	P	Q	A	Q	V	I	Y	Q	G	V	Q	Q	D	D	F	T	A	A	N	R	A	R	V
Query Conservation																						.	.	.
Alig confidence																						.	.	.																											.	.							.	.	.	.																.	.	.	.
Template Conservation																																																			.	.							.	.	.	.																.	.	.	.
Template Sequence		K	D	N	T	W	Y	A	G	G	K	L	G	W	S	Q	Y	H	D	T	G	F	Y	G	N	G	F	Q	N	N	N	G	P	T	R	N	D	Q	L	G	A	G	A	F	G	G	Y	Q	V	N	.	.	P	Y	L	G	F	E	.	.	.	.	M	G	Y	D	W	L	G	R	M	A	Y	K	G	S	V	.	.	.	.
Template Known Secondary structure															S					S						S				S				S																	.	.	T	T					.	.	.	.														S	S	.	.	.	.
Template Predicted Secondary structure																																																			.	.							.	.	.	.																.	.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.			.	.	.	.	.	.					70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		1152	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.			.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.
Query SS confidence																																.	.
Query Sequence		S	Q	S	Q	G	D	D	I	Q	T	R	L	G	L	H	S	E	W	R	T	A	V	H	V	I	P	T	L	D	L	.	.	N	Y	Y	H	D	P	H	S	T	E	I	E	E	D	G	S	T	I	S	D	D	A	V	K	Q	R	G	E	I	K	V	G	V	T	G	N	I	S	Q	R	V	S	L	R	G	S	V	A
Query Conservation																																.	.
Alig confidence																																.	.
Template Conservation
Template Sequence		D	N	G	A	F	K	A	Q	G	V	Q	L	T	A	K	L	G	Y	P	I	T	D	D	L	D	I	Y	T	R	L	G	G	M	V	W	R	A	D	S	K	G	N	Y	A	S	T	G	V	S	R	S	E	H	D	T	G	V	S	P	V	F	A	G	G	V	E	W	A	V	T	R	D	I	A	T	R	L	E	Y	Q
Template Known Secondary structure					S	S															S	S	S	S																			S				S	S	S																						S	S	S								S
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		1230	.	.	.	.	.	.	.	.	.	1240								.	.	.	.	.	.	.	.	.	1250
Predicted Secondary structure													.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.
Query Sequence		W	Q	K	G	S	D	D	F	A	Q	T	.	.	.	.	.	.	.	A	G	F	L	S	M	T	V	K	W
Query Conservation													.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	V	N	N	I	G	D	A	G	T	V	G	T	R	P	D	N	G	M	L	S	L	G	V	S	Y	R	F
Template Known Secondary structure		S		S	S					S					S	S		S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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