Job Description P45508 Confidence 98.05% Date Thu Jan 5 12:02:51 GMT 2012 Rank 21 Aligned Residues 234 % Identity 11% Template c2iwvD_ PDB info PDB header:ion channel Chain: D: PDB Molecule:outer membrane protein g; PDBTitle: structure of the monomeric outer membrane porin ompg in the2 open and closed conformation Resolution 2.3 Å

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		988	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	R	V	I	G	G	D	Y	H	Y	T	A	A	G	Q	L	A	Q	H	E	D	T	S	T	V	Q	L	S	G	D	L	F	S	G	R	W	G	T	D	G	E	W	M	L	G	I	V	G	G	Y	S	D	N	Q	G	D	S	R	S	N	M	T	G	T	R	A	D	N	Q	N	H	G	Y	A	V	G	L	T	S
Query Conservation
Alig confidence																				.													.																																								.	.
Template Conservation																				.													.																																								.	.
Template Sequence		W	R	I	A	L	A	Y	Y	Q	E	G	P	V	D	Y	S	A	G	.	K	R	G	T	W	F	D	R	P	E	L	E	.	V	H	Y	Q	F	L	E	N	D	D	F	S	F	G	L	T	G	G	F	R	N	Y	G	Y	H	Y	V	D	E	P	G	K	D	T	A	N	M	Q	R	.	.	W	K	I	A	P	D	W
Template Known Secondary structure																T	T	T	T	.				S									.									S	S																	S	S		T	T									.	.
Template Predicted Secondary structure																				.													.																																								.	.
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.
		1068	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	W	F	Q	H	G	N	Q	K	Q	G	A	W	L	D	S	W	L	Q	Y	A	W	F	S	N	D	V	S	E	Q	E	D	G	T	D	H	Y	H	S	S	G	I	I	A	S	L	E	A	G	Y	Q	W	L	P	G	R	G	V	V	I	E	P	Q	A	Q	V	I	Y	Q	G	V	Q	Q	D	D	F	T	A	A	N
Query Conservation
Alig confidence					.	.	.	.																															.	.	.	.	.	.	.																					.	.	.
Template Conservation					.	.	.	.																															.	.	.	.	.	.	.																					.	.	.
Template Sequence		D	V	K	.	.	.	.	L	T	D	D	L	R	F	N	G	W	L	S	M	Y	K	F	A	N	D	L	N	T	T	G	Y	A	D	T	R	V	.	.	.	.	.	.	.	E	T	E	T	G	L	Q	Y	T	F	N	E	T	V	A	L	R	V	N	Y	.	.	.	Y	L	E	R	G	F	N	M	D	D	S	R	N
Template Known Secondary structure					.	.	.	.		S	S	S														S									S				.	.	.	.	.	.	.											S	S	S	B							.	.	.								S	S	T	T
Template Predicted Secondary structure					.	.	.	.																															.	.	.	.	.	.	.																					.	.	.
Template SS confidence
		119	120	.					.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.								.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.				.	.	.	.	.	.	.	.	180	.	.	.	.
		1148	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	R	V	S	Q	S	Q	G	D	D	I	Q	T	R	L	G	L	H	S	E	W	R	T	A	V	H	V	I	P	T	L	D	L	N	Y	Y	H	D	P	H	S	T	E	I	E	E	D	G	S	T	I	S	D	D	A	V	K	Q	R	G	E	I	K	V	G	V	T	G	N	I	S	Q	R	V	S	L	R	G	S
Query Conservation
Alig confidence							.	.	.	.	.															.																													.	.	.	.	.
Template Conservation							.	.	.	.	.															.																													.	.	.	.	.
Template Sequence		N	G	E	F	S	.	.	.	.	.	T	Q	E	I	R	A	Y	L	P	L	T	L	G	N	.	H	S	V	T	P	Y	T	R	I	G	L	D	R	W	S	N	W	D	W	Q	D	D	I	E	R	E	G	H	.	.	.	.	.	D	F	N	R	V	G	L	F	Y	G	Y	D	F	Q	N	G	L	S	V	S	L	E
Template Known Secondary structure		T	T				.	.	.	.	.													T	T	.																	T	T	T	T	T			S					.	.	.	.	.														S	S	S
Template Predicted Secondary structure							.	.	.	.	.															.																													.	.	.	.	.
Template SS confidence
		185	.	.	.	.						190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.						.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		1228	.	1230	.	.	.	.	.	.	.	.	.					1240	.	.	.	.	.	.	.	.	.	1250
Predicted Secondary structure														.	.	.	.
Query SS confidence														.	.	.	.
Query Sequence		V	A	W	Q	K	G	S	D	D	F	A	Q	.	.	.	.	T	A	G	F	L	S	M	T	V	K	W
Query Conservation														.	.	.	.
Alig confidence														.	.	.	.
Template Conservation
Template Sequence		Y	A	F	E	W	Q	D	H	D	E	G	D	S	D	K	F	H	Y	A	G	V	G	V	N	Y	S	F
Template Known Secondary structure										S	S	S
Template Predicted Secondary structure
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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