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Job DescriptionP46923
Confidence100.00%DateThu Jan 5 12:04:40 GMT 2012
Rank18Aligned Residues616
% Identity37%Templated1tmoa2
SCOP infoFormate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3
Resolution2.50

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2930.........40.........50.........60.........70.........80.........90.........100 .......
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Query Sequence  AWAEEKGGKILTAGRWGAMNVEVKDGKIVSSTGALAKTIPNSLQSTAADQVHTTARIQHPMVRKSYLDNPLQ. PAKGRGE
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Template Sequence  NEDEWLTTGSH. . . . FGAFKMKRKNGVIAEVKPFDLDKYPTDMINGIRGMVYNPSRVRYPMVRLDFLLKGHKSNTHQRGD
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T....TTT
TT
SS

GGGGTS
TTB

S
GGGS
GGGTTS
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   5....10..... ....20.........30.........40.........50.........60.........70.........80
 
   108.110.........120.........130.........140.........150.........160.........170.........180.......
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Query Sequence  DTYVQVSWEQALKLIHEQHDRIRKANGPSAIFAGSYGWRSSGVLHKAQTLLQRYMNLAGGYSGHSGDYSTGAAQVIMPHV
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Template Sequence  FRFVRVTWDKALTLFKHSLDEVQTQYGPSGLHAGQTGWRATGQLHSSTSHMQRAVGMHGNYVKKIGDYSTGAGQTILPYV
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T
GGG







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B

SSSTT
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   81........90.........100.........110.........120.........130.........140.........150.........160
 
   188.190.........200.........210.........220..... ....230.........240.........250......... 260..
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Query Sequence  VGSVEVYEQQTSWPLILENSQVVVLWGMNPLNTLKIAW. . . . SSTDEQGLEYFHQLKKSGKPVIAIDPIRSETIEF. FDD
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Template Sequence  LGSTEVYAQGTSWPLILEHSDTIVLWSNDPYKNLQVGWNAETHESFAYLAQLKEKVKQGKIRVISIDPVVTKTQAYLGC.
Template Known Secondary structure  TSS

TTS




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TS

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TTSS
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   161........170.........180.........190.........200.........210.........220.........230.........
 
   263......270.........280.........290.........300.........310.........320.........330.........340..
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Query Sequence  NATWIAPNMGTDVALMLGIAHTLMTQGKHDKVFLEKYTTGYPQFEEYLTGKSDNTPKSAVWAAEITGVPEAQIVKLAELM
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Template Sequence  . . EQLYVNPQTDVTLMLAIAHEMISKKLYDDKFIQGYSLGFEEFVPYVMGTKDGVAKTPEWAAPICGVEAHVIRDLAKTL
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TT
TT
S

TTTTS



T

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   240.........250.........260.........270.........280.........290.........300.........310.......
 
   343......350.........360.........370.........380.........390.........400.........410...... ..
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Query Sequence  AANRTMLMAGWGIQRQQYGEQKHWMLVTLAAMLGQIGTPGGGFGFSYHYSNGGNPTRVGGVLPEMSAAIAGHAS. . . . EA
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Template Sequence  VKGRTQFMMGWCIQRQQHGEQPYWMAAVLATMIGQIGLPGGGISYGHHYSSIGVPSSGAAAPGAFPRNLDENQKPLFDSS
Template Known Secondary structure  S

SGGGSSTTTT
TTSTT
S
TTSTTTTS











SS

TT


SS


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   318.320.........330.........340.........350.........360.........370.........380.........390.......
 
   419420.........430.........440.........450.........460.........470.........480.........490........
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Query Sequence  ADDGGMTAIPVARIVDALENPGGKYQHNGKEQTYPNIKMIWWAGGGNFTHHQDTNRLIKAWQKPEMIVVSECYWTAAAKH
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Template Sequence  DFKGASSTIPVARWIDAILEPGKTIDANGSKVVYPDIKMMIFSGNNPWNHHQDRNRMKQAFHKLECVVTVDVNWTATCRF
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TTS
SGGGSTT

SSS




S

SS
TT
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T
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   398.400.........410.........420.........430.........440.........450.........460.........470.......
 
   499500.........510.........520.........530.........540.........550.........560.........570........
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Query Sequence  ADIVLPITTSFERNDLTMTGDYSNQHIVPMKQAVAPQFEARNDFDVFADLAELLKPGGKEIYTEGKDEMAWLKFFYDAAQ
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Template Sequence  SDIVLPACTTYERNDIDVYGAYANRGILAMQKMVEPLFDSLSDFEIFTRFAAVLGKE. . KEYTRNMGEMEWLETLYNECK
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SB

GGGS

TTT




S


TT
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TT
..TT

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   478.480.........490.........500.........510.........520.........530.... .....540.........550.....
 
   579580.........590.........600.........610.........620.........630.........640.........650........
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Query Sequence  KGARAQRVTMPMFNAFWQQNKLIEMRHSEKNEQYVRYGDFRADPVKNALGTPSGKIEIYSKTLEKFGYKDCPAHPTWLAP
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Template Sequence  AAN. AGKFEMPDFATFWKQGYVHFGDGEV. . . . WTRHADFRNDPEINPLGTPSGLIEIFSRKIDQFGYDDCKGHPTWMEK
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   556.. .560.........570.........580... ......590.........600.........610.........620.........630
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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