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Job DescriptionP46923
Confidence100.00%DateThu Jan 5 12:04:40 GMT 2012
Rank25Aligned Residues572
% Identity19%Templated1ogya2
SCOP infoFormate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3
Resolution3.2

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  AEEKGGKILTAGRWGAMNVEVKDGKIVSSTGALAKTIP. . . . NSLQSTAADQVHTTARIQHPMVRKSYLDNPLQPAKGRG
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Template Sequence  IRWSKAPCRFCGTGCGVMVGTRDGQVVATHGDTQAEVNRGLNCVKGYFLSKIMYGEDRLTTPLLRMK. . . . . . . DGVYHK
Template Known Secondary structure 

SS
SS

TT
TT
TTTSS


GGGGSTT
TT


S
S
S.......SS


T
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   12.......20.........30.........40.........50.........60.........70........ .80....
 
   107..110.........120.........130.........140.........150.........160.........170.... .....180....
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Query Sequence  EDTYVQVSWEQALKLIHEQHDRIRKANGPSAIFAGSYGWRSSGVLHKAQTLLQRYMNLAGGYSGHSGD. . YSTGAAQVIM
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Template Sequence  EGEFAPVSWDEAFDVMAAQAKLVLKEKAPEAVGMFGSGQWT. . . . IWEGYAASKLMRAGFRSNNLDPNARHCMASAATAF
Template Known Secondary structure  T




T
GGG
TTS
....TTS



TT
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   85....90.........100.........110.........120..... ....130.........140.........150.........160
 
   185....190.........200.........210.........220.........230.........240.........250.........260....
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Query Sequence  PHVVGSVEVYEQQTSWPLILENSQVVVLWGMNPLNTLKIAWSSTDEQGLEYFHQLKKSGKPVIAIDPIRSETIEFFDDNA
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Template Sequence  MRTFG. . . . MDEPMGCYDDFEAADAFVLWGSNMAEMHPILWSR. . . . . . LTDRRLSHEHVRVAVLSTFTHRSSDLSD. . .
Template Known Secondary structure  S....S
S
SS
TT
SS

S......STT
SS

GGGGS
S...
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   161.... ....170.........180.........190......... 200.........210.........220.......
 
   265....270.........280.........290.........300. ........310
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Query Sequence  TWIAPNMGTDVALMLGIAHTLMTQGKHDKVFLEKYTT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GYPQFEEYL
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Template Sequence  TPIIFRPGTDRAILNYIAHHIISTGRVNRDFVDRHTNFALGATDIGYGLRPEHQLQLAAKGAADAGAMTPTDFETFAALV
Template Known Secondary structure 

TTTTT




SS

TT

TTSS
TT
SS
S


B

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   228.230.........240.........250.........260.........270.........280.........290.........300.......
 
   311........320.........330.........340... ......350.........360.........370.........380........
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Query Sequence  TGKSDNTPKSAVWAAEITGVPEAQIVKLAELMA. . ANRTMLMAGWGIQRQQYGEQKHWMLVTLAAMLGQIGTPGGGFGFS
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Template Sequence  . . . . . . SEYTLEKAAEISGVEPALLEELAELYADPDRKWMSLWTMGFNQHVRGVWANHMVYNLHLLTGKISEPGNSPFSL
Template Known Secondary structure  ......TS



TTSTTS
SSSTTT

SBTTB
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   308.310.........320.........330.........340.........350.........360.........370.........380.
 
   389390...... ...400.........410 .........420.........430.........440.........450.........460......
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Query Sequence  YHYSNGGN. PTRVGGVLPEMSAA. IAGHASEAADDGGMTAIPVARIVDALENPGGKYQHNGKEQTYPNIKMIWWAGGGNF
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Template Sequence  TGQPFACGTAREVGTFAHRLPADMVVTNPEHRAHAEEIWKLPAGLLP. . . DWVGAHAVEQDRKLHDGEINFYWVQVNNNM
Template Known Secondary structure 

STTTTTTT
STTTTTSS
TT

TT
S
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S



TS

S

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   382.......390.........400.........410.........420........ .430.........440.........450........
 
   467..470......... 480.........490.........500.........510.........520.........530.........540....
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Query Sequence  THHQDTNRLIKAW. . QKPEMIVVSECYWTAAAKHADIVLPITTSFERNDLTMTGDYSNQHIVPMKQAVAPQFEARNDFDV
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Template Sequence  QAAPNIDQETYPGYRNPENFIVVSDAYPTVTGRAADLVLPAAMWVEKEGAYGNAERR. . . THFWHQLVEAPGEARSDLWQ
Template Known Secondary structure  STT





TT
SS

TSSB

GGGS

TTS...
B
S

STT
B
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   459460.........470.........480.........490.........500.........510..... ....520.........530.....
 
   545....550........ .560.........570.........580.....
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Query Sequence  FADLAELLKPGGKE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . IYTEGKDEMAWLKFFYDAAQKGARAQR
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Template Sequence  LMEFSKRFTTDEVWPEEILSAAPAYRGKTLFEVLFANGSVDRFPASDVNPDHANHEAALFGFYPQKGLFEEYAAFGRGHG
Template Known Secondary structure  TT

S

SSSSS

TTTTTT
SSSSS
SBSSSS
SSSB
SSSB
TTSSSSS
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   536...540.........550.........560.........570.........580.........590.........600.........610.....
 
   586...590.........600.........610.........620...... ...630........
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Query Sequence  VTMPMFNAFWQQNKLIEMRHSEKNEQYVRYGDFRADPVKNA. . . . LGTPSGKIEIYS
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Template Sequence  HDLAPFDTYHEVRGLHWPVVEGEETRWRYREGFDPYVKPGEGLRFYGKPDGRAVILG
Template Known Secondary structure 




TTSS
S

BTTB

SSSSBBTTBTTS
SS
SB

TTSSS

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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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