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Job DescriptionP46923
Confidence100.00%DateThu Jan 5 12:04:40 GMT 2012
Rank20Aligned Residues636
% Identity18%Templated1kqfa2
SCOP infoFormate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3
Resolution1.60

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2930.........40.........50. ........60........ .70.........80.........90.......
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Query Sequence  AWAEEKGGKILTAGRWGAMNVEV. . . . . . . KDGKIVSSTGALAKTIP. . . . NSLQSTAADQVHTTARIQHPMVRKSYLDN
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Template Sequence  LRAKEIRNTCTYCSVGCGLLMYSLGDGAKNAREAIYHIEGDPDHPVSRGALCPKGAGLLDYVNSENRLRYPEYRAP. . . .
Template Known Secondary structure  TTS
SSBTT

S
S
TTS


TT
TTTTT


TTT
TTB

S

T....
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   41........50.........60.........70.........80.........90.........100.........110......
 
   98.100.........110.........120.........130..... ....140.........150.........160.....
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Query Sequence  PLQPAKGRGEDTYVQVSWEQALKLIHEQHDRIRKANGP. . . . . . . . . . . . SAIFAGSYGWRSSGVLHKAQTLLQRYMNLA
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Template Sequence  . . . . . . . . GSDKWQRISWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLSTGMLCASGAS. . . . NETGMLTQKFARSL
Template Known Secondary structure  ........T
SS




TTS
B
S

TTS
....T
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   117..120.........130.........140.........150.........160.........170 .........180....
 
   166...170.........180.........190.........200.........210.........220.........230.........240.. ..
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Query Sequence  GGYSGHSGDYSTGAAQVIMPHVVGSVEVYEQQTSWPLILENSQVVVLWGMNPLNTLKIAWSSTDEQGLEYFHQLKKS. GK
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Template Sequence  GMLAVDNQARVHGPTVASLAPTFG. . . . RGAMTNHWVDIKNANVVMVMGGNAAEAHPVGF. . . . . . . . RWAMEAKNNNDA
Template Known Secondary structure  TB


GGG

S....

S
SS
TGGGGG
SS

STTTT........S

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   185....190.........200........ .210.........220.........230.........240 .........250..
 
   245....250.........260.........270.........280.........290.........300..
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Query Sequence  PVIAIDPIRSETIEFFDDNATWIAPNMGTDVALMLGIAHTLMTQGKHDKVFLEKYTTG. . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  TLIVVDPRFTRTASVAD. . . IYAPIRSGTDITFLSGVLRYLIENNKINAEYVKHYTNASLLVRDDFAFEDGLFSGYDAEK
Template Known Secondary structure 
SS

T
S...


TT
TT
S
BSTTBBB
TT

TTTTTTT
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   254.....260.........270 .........280.........290.........300.........310.........320.........330
 
   303......310.........320.........330.........340.... ...
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . YPQFEEYLTGKSDNTPKSAVWAAEITGVPEAQIVKLAELMAA. . . . . NRT
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Template Sequence  RQYDKSSWNYQLDENGYAKRDETLTHPRCVWNLLKEHV. . . . . . SRYTPDVVENICGTPKADFLKVCEVLASTSAPDRTT
Template Known Secondary structure  T

TTSSB
B
TTSSB
B
TTS
STTB......TT




GGGSTT

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   331........340.........350.........360........ .370.........380.........390.........400....
 
   348.350.........360.........370.........380.........390.........400.........410.........420
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Query Sequence  MLMAGWGIQRQQYGEQKHWMLVTLAAMLGQIGTPGGGFGFSYHYSNGGNPTRVGGVLPEMSAAIAGHASEAAD. . . . . . .
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Template Sequence  TFLYALGWTQHTVGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSNIQGLTDLGLLSTSLPGYLTLPSEKQVDLQSYLEA
Template Known Secondary structure  SSSTTT
TT
TT
S


BTTTT
STTGGG

BTT

S
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   405....410.........420.........430.........440.........450.........460.........470.........480....
 
   421........430.........440.........450.........460.........470
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DGGMTAIPVARIVDALENPGGKYQHNGKEQTYPNIKMIWWAGGGNFTHHQ
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Template Sequence  NTPKATLADQVNYWSNYPKFFVSLMKSFYGDAAQKENNWGYDWLPKWDQTYDVIKYFNMMDEGKVTGYFCQGFNPVASFP
Template Known Secondary structure  S


SSSS


GGGGGGG

GGGGGGGGGS

BSS


TT


S

SS
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   485....490.........500.........510.........520.........530.........540.........550.........560....
 
   471........480.........490......... 500.........510.........520.........530...
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Query Sequence  DTNRLIKAWQKPEMIVVSECYWTAAAKHA. . . . . . . . . . . . . . . . . DIVLPITTSFERNDLTMTGDYSNQHIVPMKQAVA
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Template Sequence  DKNKVVSCLSKLKYMVVIDPLVTETSTFWQNHGESNDVDPASIQTEVFRLPSTCFAEEDGSIANSGRW. . . LQWHWKGQD
Template Known Secondary structure  STT
SSB

TTTTTTS

GGGG


GGG


B

GGGS

TT
...


S
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   565....570.........580.........590.........600.........610.........620.........630.. .......640.
 
   534.....540.........550... ......560.........570.........580... ......
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Query Sequence  PQFEARNDFDVFADLAELLK. . . . . . . . . . . . . . . . PGGKEIYTEGKDEMAWLKFFYDAAQKGARA. . . . . . . . QRVTMP
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Template Sequence  APGEARNDGEILAGIYHHLRELYQSEGGKGVEPLMKMSWNYKQPHEPQSDEVAKENNGYALEDLYDANGVLIAKKGQLLS
Template Known Secondary structure 
STT
B


SSS



SSTTS


SS

TTS

TT
B
S
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   642.......650.........660.........670.........680.........690.........700.........710.........720.
 
   590......... 600.........610.........620.........630.........640.........650.........
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Query Sequence  MFNAFWQQNK. . . . . . . . . . LIEMRHSEKNEQYVRYGDFRADPVKNALGTPSGKIEIYSKTLEKFGYKDCPAHPTWLAPD
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Template Sequence  SFAHLRDDGTTASSCWIYTGSWTEQGNQMANRDNSDPSGLGNTLGWAWAWPLNRRVLYNRASADINGKPW. . . . . . . . . .
Template Known Secondary structure 
GGG

SSSS
S
GGGTTSTTGGG
B



TTSSS

TTBSTTTT
SSTTGGGGB
TTS
BS..........
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   722.......730.........740.........750.........760.........770.........780.........790.
 
   660.........670.........680.........690.........700.........710.. .......720...
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Query Sequence  EWKGTADEKQLQLLTAHPAHRLHSQLNYAELRKKYAIADREPITIHTEDAARF. . . . GIANGDLVRVW
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Template Sequence  . . . . . DPKRMLIQWNGSK. . . . WTGNDIPDFGNAAPGTPTGPFIMQPEGMGRLFAINKMAEGPFPEHY
Template Known Secondary structure  .....STTS


SSS....SS

SS
S

TTSS

S
TTSTTSSB
SS
TT
STT
SS



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   792.......800.... .....810.........820.........830.........840.........850
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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