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Job DescriptionP46923
Confidence100.00%DateThu Jan 5 12:04:40 GMT 2012
Rank22Aligned Residues496
% Identity19%Templated1h0ha2
SCOP infoFormate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3
Resolution1.8

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  TSAAPLPAWAEEKGGKILTAGRWGAMNVEV. . KDGKIVSSTGALAKTIP. . . . NSLQSTAADQVHTTARIQHPMVRKSYL
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Template Sequence  ATMALKTVDAKQTTSVCCYCSVGCGLIVHTDKKTNRAINVEGDPDHPINEGSLCAKGASTWQLAENERRPANPLYRAP. .
Template Known Secondary structure 




TTTTS
SSBTT


TTT


TT
TTTTT


TS
TTS
SS

T..
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   1........10.........20.........30.........40.........50.........60.........70........
 
   96...100.........110.........120.........130.........140 .........150.........160.......
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Query Sequence  DNPLQPAKGRGEDTYVQVSWEQALKLIHEQHDRIRKANGPSAIFA. . . . . . . . GSYGWRSSGVLHKAQTLLQRYMNLAGG
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Template Sequence  . . . . . . . . . . GSDQWEEKSWDWMLDTIAERVAKTREATFVTKNAKGQVVNRCDGIASVGSAAMDNEECWIYQAWLRSLGL
Template Known Secondary structure  ..........T
SS



TTS

S

TTS
TTB
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   7980.........90.........100.........110.........120.........130.........140........
 
   168.170.........180.........190.........200.........210.........220.........230.........240.......
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Query Sequence  YSGHSGDYSTGAAQVIMPHVVGSVEVYEQQTSWPLILENSQVVVLWGMNPLNTLKIAWSSTDEQGLEYFHQLKKSGKPVI
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Template Sequence  FYIEHQARIHSATVAALAESYG. . . . RGAMTNHWIDLKNSDVILMMGSNPAENHPISF. . . . . . . . KWVMRAKDKGATLI
Template Known Secondary structure 


GGG

S....

S
SS
TGGGGG
SS

STT........TT
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   149150.........160.........170 .........180.........190.........200.. .......210......
 
   248.250.........260.........270.........280.........290.........300..
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Query Sequence  AIDPIRSETIEFFDDNATWIAPNMGTDVALMLGIAHTLMTQGKHDKVFLEKYTTG. . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  HVDPRYTRTSTKCD. . . LYAPLRSGSDIAFLNGMTKYILEKELYFKDYVVNYTNASFIVGEGFAFEEGLFAGYNKETRKY
Template Known Secondary structure 
SS

TTGGG
S...


TT
TT
S
BGGGBBB
TT

TTTTTTTT
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   218.220.........230. ........240.........250.........260.........270.........280.........290....
 
   303......310.........320.........330.........340.... .....350
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . YPQFEEYLTGKSDNTPKSAVWAAEITGVPEAQIVKLAELMAA. . . . . NRTMLM
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Template Sequence  DKSKWGFERDENGNPKRDETLKHPRCVFQIMKKHY. . . . . . ERYDLDKISAICGTPKELILKVYDAYCATGKPDKAGTIM
Template Known Secondary structure 
GGGG
B
B
TTS
B
B
TTS
STTB......TT




GGGSTT

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   295....300.........310.........320......... 330.........340.........350.........360........
 
   351........360.........370.........380.........390.........400.........410.........420
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Query Sequence  AGWGIQRQQYGEQKHWMLVTLAAMLGQIGTPGGGFGFSYHYSNGGNPTRVGGVLPEMSAAIAGHASEAAD. . . . . . . . . .
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Template Sequence  YAMGWTQHTVGVQNIRAMSINQLLLGNIGVAGGGVNALRGEANVQGSTDHGLLMHIYPGYLGTARASIPTYEEYTKKFTP
Template Known Secondary structure 



SSTT
SSSTT
S

SBTTTT
BTTTTT

BTT

S

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   369370.........380.........390.........400.........410.........420.........430.........440........
 
   421........430.........440.........450.........460.........470....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . DGGMTAIPVARIVDALENPGGKYQHNGKEQTYPNIKMIWWAGGGNFTHHQDTNR
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Template Sequence  VSKDPQSANWWSNFPKYSASYIKSMWPDADLNEAYGYLPKGEDGKDYSWLTLFDDMFQGKIKGFFAWGQNPACSGANSNK
Template Known Secondary structure 



TT


GGGG
TTS
S

B
TT


STT


S

SSS
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   449450.........460.........470.........480.........490.........500.........510.........520........
 
   475....480.........490........ .500.........510.........520.........530.........540.
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Query Sequence  LIKAWQKPEMIVVSECYWTAAAKH. . . . . . . . . . . . . ADIVLPITTSFERNDLTMTGDYSNQHIVPMKQAVAPQFEARND
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Template Sequence  TREALTKLDWMVNVNIFDNETGSFWRGPDMDPKKIKTEVFFLPCAVAIEKEGSISNSGRW. . . MQWRYVGPEPRKNAIPD
Template Known Secondary structure  TT
SSS

TTTTGGGSTT

GGG


B

GGG


TT
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SS


TT
B
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   529530.........540.........550.........560.........570.........580........ .590.........600.....
 
   542.......550...
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Query Sequence  FDVFADLAELLK
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Template Sequence  GDLIVELAKRVQ
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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