Job Description P46923 Confidence 65.78% Date Thu Jan 5 12:04:40 GMT 2012 Rank 116 Aligned Residues 51 % Identity 16% Template c2yujA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:ubiquitin fusion degradation 1-like; PDBTitle: solution structure of human ubiquitin fusion degradation2 protein 1 homolog ufd1 Resolution UNK

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		667	.	.			670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence		E	K	Q	.	.	L	Q	L	L	T	A	H	P	A	H	R	L	H	S	Q	L	N	Y	A	E	L	R	K	K	Y	A	I	A	D	R	E	P	I	T	I	H	T	E	D	A	A	R	F	G	I	A	N	G	D	L	V	R	V	W	N
Query Conservation					.	.
Alig confidence					.	.																	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.
Template Sequence		T	Y	P	M	L	F	K	L	T	N	K	N	S	D	R	M	T	H	C	G	V	.	.	.	.	.	.	.	L	E	F	V	A	D	E	G	I	C	Y	L	P	H	W	M	M	Q	N	L	L	L	E	E	G	G	L	V	Q	V	E	S
Template Known Secondary structure			S	S								T	T	T	T								.	.	.	.	.	.	.						B	T	T	B					S							T			T	T
Template Predicted Secondary structure																							.	.	.	.	.	.	.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.								80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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