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Job DescriptionP46923
Confidence100.00%DateThu Jan 5 12:04:40 GMT 2012
Rank10Aligned Residues711
% Identity19%Templatec2ivfA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:ethylbenzene dehydrogenase alpha-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum
Resolution1.88 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   34.....40. ........50.........60........ .70.........80.........90.........100
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Query Sequence  KGGKILTA. . GRWGAMNVEVKDGKIVSSTGALAKTIP. . . . . . . . . . . NSLQSTAADQVHTTARIQHPMVRKSYLDNPLQ
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Template Sequence  WGSHLNICWPQGSCKFYVYVRNGIVWREEQAAQTPACNVDYVDYNPLGCQKGSAFNNNLYGDERVKYPLKR. . . . . . . . .
Template Known Secondary structure 


S

SS




TT





SSTTS



S


TTGGGTTSTTB

S
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   7980.........90.........100.........110.........120.........130.........140.........
 
   101........110.........120.........130.........140.........150.........160.........170.........180
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Query Sequence  PAKGRGEDTYVQVSWEQALKLIHEQHDRIRKANGPSAIFAGSYGWRSSGVLHKAQTLLQRYMNLAGGYSGHSGDYSTGAA
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Template Sequence  . VGKRGEGKWKRVSWDEAAGDIADSIIDSFEAQGSDGFILDAPHVHAG. . . SIAWGAGFRMTYLMDGVSPDIN. VDIGDT
Template Known Secondary structure  .
SSTTS



GGGG



STT
...T
B
.T

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   150.........160.........170.........180.........190...... ...200.........210........ .220....
 
   181........190.........200.........210.........220.........230.........240.........250.........260
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Query Sequence  QVIMPHVVGSVEVYEQQTSWPLILENSQVVVLWGMNPLNTLKIAWSSTDEQGLEYFHQLKKSGKPVIAIDPIRSETIEFF
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Template Sequence  YMGAFHTFG. . . . KMHMGYSADNLLDAELIFMTCSNWSYTYPSS. . . . . . . . YHFLSEARYKGAEVVVIAPDFNPTTPAA
Template Known Secondary structure 
S....



B

GGGGGG
SS


TTT........T

SS

TTGGG
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   225....230... ......240.........250.........260.... .....270.........280.........290..
 
   261........270.........280.........290.........300
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Query Sequence  DDNATWIAPNMGTDVALMLGIAHTLMTQGKHDKVFLEKYT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  D. . . LHVPVRVGSDAAFWLGLSQVMIDEKLFDRQFVCEQTDLPLLVRMDTGKFLSAEDVDGGEAKQFYFFDEKAGSVRKA
Template Known Secondary structure  S...


TT
TT
S
BSTTSTTT
SB
BS

TT
TTTT
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   293 ......300.........310.........320.........330.........340.........350.........360.........
 
   301........310.........320.........330.........340.........350
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TGYPQFEEYLTGKSDNTPKSAVWAAEITGVPEAQIVKLAELMAANRTMLM
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Template Sequence  SRGTLKLDFMPALEGTFSARLKNGKTIQVRTVFEGLREHL. . . . . . KDYTPEKASAKCGVPVSLIRELGRKVAKKRTCSY
Template Known Secondary structure 
SS



SS



S

TTS
G......GGGS


S
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   370.........380.........390.........400......... 410.........420.........430.........440...
 
   351........360.........370.........380.........390.........400.........410.........420.........430
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Query Sequence  AGWGIQRQQYGEQKHWMLVTLAAMLGQIGTPGGGFGFSYHYSNGGNPTRVGGVLPEMSAAIAGHASEAADDGGMTAIPVA
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Template Conservation   
 
      
    


  
  
 
  
  


                                              
Template Sequence  IGFSSAKSYHGDLMERSLFLAMALSGNWGKPGTGAFAWAYSDDNMVYLGVMSKPTAQGGMDELHQMAEGFNKRTLEADPT
Template Known Secondary structure 
TTTTTBTTTT
SSSTT

S
B





SS
GGGTTT
TT
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   444.....450.........460.........470.........480.........490.........500.........510.........520...
 
   431........440.........450........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RIVDALENPGGKYQHNGKEQTYPNIKMI
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Template Conservation                                                               
              

  
Template Sequence  STDEMGNIEFMKVVTSAVGLVPPAMWLYYHVGYDQLWNNKAWTDPALKKSFGAYLDEAKEKGWWTNDHIRPAPDKTPQVY
Template Known Secondary structure 

TT
SSTT
GGGS
TTSSS
TTSS
TTTS
S
TTS


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   524.....530.........540.........550.........560.........570.........580.........590.........600...
 
   459460.........470..... ....480.........490.........500.........510.........520.........530......
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Query Sequence  WWAGGGNFTHHQDTNRL. . IKAWQKPEMIVVSECYWTAAAKHADIVLPITTSFERNDLTMTGDYSNQHIVPMKQAVAPQF
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Template Sequence  MLLSQNPMRRKRSGAKMFPDVLFPKLKMIFALETRMSSSAMYADIVLPCAWYYEKHEMTTPCS. GNPFFTFVDRSVAPPG
Template Known Secondary structure  S

STTTTGGG
SSB

TTGGG
SB

TT



S.SS

S

ST
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   604.....610.........620.........630.........640.........650.........660...... ...670.........680..
 
   537..540.........550.........560 .........570.........580.........590..
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Query Sequence  EARNDFDVFADLAELLKPGGKEIY. . . . . . . . . . . . . . . . . . . . . . . . TEGKDEMAWLKFFYDAAQKGARAQRVTMPMFN
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Template Sequence  ECREEWDAIALILKKVGERAAARGLTEFNDHNGRKRRYDELYKKFTMDGHLLTNEDCLKEMVDINRAV. . GVFAKDYTYE
Template Known Secondary structure  T
B
TT


TTS
GGGTTTTT

ST..TSS
TT

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   683......690.........700.........710.........720.........730.........740.........750 .........760
 
   593......600.........610.........620.. .......630.........640.........650.........660..
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Query Sequence  AFWQQNKLIEMRHSEKNEQYVRYGDFRADP. . . . . . . . . . VKNALGTPSGKIEIYSKTLEKFGYKDCPAHPTWLAPDEWK
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Template Sequence  KFKKEGQTRFLSMGTGVSRYAHANEVDVTKPIYPMRWHFDDKKVFPTHTRRAQFYLD. . HDWYLEAGESLPTHKDT. . . P
Template Known Secondary structure 


S
TTST
S


TTS


S
S



SSTTSSB




..
T
SS





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   761........770.........780.........790.........800.........810....... ..820.........830.... .
 
   663......670.........680.........690.........700.........710.........720.........730.........740..
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Query Sequence  GTADEKQLQLLTAHPAHRLHSQLNYAELRKKYAIADREPITIHTEDAARFGIANGDLVRVWNKRGQILTGAVVTDGIKKG
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Template Sequence  MVGGDHPFKITGGHPRVSIHSTHLTN. SHLSRLHRGQPVVHMNSKDAAELGIKDGDMAKLFNDFADCEIMVRTAPNVQPK
Template Known Secondary structure 
TTSS
S



SSSSTTTTTT
.TTS
SS
TT

TT

SS
TTS
TT
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   836...840.........850.........860. ........870.........880.........890.........900.........910....
 
   743......750.........760.........770.... .....780 .........790..
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Query Sequence  VVCVHEGAWPDLENGLCKNGSANVLTADIPSS. QLANAC. . . . . . . . . . . . . . . AGNSALVYIEKY
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Template Sequence  QCIVYFWDAHQ. . . . YKGWKPYDILLIGMPKPLHLAGGYEQFRYYFMNGSPAPVTDRGVRVSIKKA
Template Known Secondary structure 




GGG....SGGG

GGGG





GGGG

SBTTB

BTTB
S

S


BT
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   915....920..... ....930.........940.........950.........960.........970......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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