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Job DescriptionP46923
Confidence100.00%DateThu Jan 5 12:04:40 GMT 2012
Rank27Aligned Residues511
% Identity17%Templatec2fugC_
PDB info PDB header:oxidoreductaseChain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
Resolution3.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30.........40.........50.........60........ .70.........80.........90.........100.
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Query Sequence  PLPAWAEEKGGKILTAGRWGAMNVEVKDGKIVSSTGALAKTIP. . . . NSLQSTAADQVHTTARIQHPMVRKSYLDNPLQP
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Template Sequence  ARNWEMEETPTTCALCPVGCGITADTRSGELLRIRAREVPEVNEIWICDAGRFGHE. WADQNRLKTPLVRKE. . . . . . . .
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TTTS


SSTT


TT


TTSS
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   244.....250.........260.........270.........280.........290......... 300.........310....
 
   102.......110.........120.........130.........140.........150.........160.........170.........180.
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Query Sequence  AKGRGEDTYVQVSWEQALKLIHEQHDRIRKANGPSAIFAGSYGWRSSGVLHKAQTLLQRYMNLAGGYSGHSGDYSTGAAQ
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Template Sequence  . . . . . . GRLVEATWEEAFLALKEGL. . . . KEARGEEVGLYLAHDAT. . . . LEEGLLASELAKALKTPHLDFQGRTAAPA.
Template Known Secondary structure  ......SS

....TTSSSSS

TT

....SSS

TT

SS
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   315....320.........330... ......340.........350 .........360.........370.........
 
   182.......190.........200.........210.........220.........230.........240.........250.........260.
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Query Sequence  VIMPHVVGSVEVYEQQTSWPLILENSQVVVLWGMNPLNTLKIAWSSTDEQGLEYFHQLKKSGKPVIAIDPIRSETIEFFD
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Template Sequence  . . . . . . . . . . . . SLFPPASLEDLLQADFALVLG. DPTEEAPILH. . . . . . . . LRLSEF. . . . VRDLKPPHRYNHGTPFAD
Template Known Secondary structure  ............TSS
B


S
S.
S............TTT





BTTBS
S

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   380.........390.........400 .........410 ...... ...420.........430....
 
   262.......270.........280.........290.........300.........310.........320.........330.........340.
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Query Sequence  DNATWIAPNMGTDVALMLGIAHTLMTQGKHDKVFLEKYTTGYPQFEEYLTGKSDNTPKSAVWAAEITGVPEAQIVKLAEL
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Template Sequence  . . . LQIKERMPRRTDKMALFAPYRAPLMKWAAIHEVHRPGEE. . . . . . . . . . . . . . . REILLALLGDKEGSEMVAKAKEA
Template Known Secondary structure  ...TT

SS



GGGSS

GGGTT
S

TT
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   435....440.........450.........460.........470... ......480.........490......
 
   342. ......350.........360.........370.........380.........390.........400.........410.........420
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Query Sequence  MA. ANRTMLMAGWGIQRQQYGEQKHWMLVTLAAMLGQIGTPGGGFGFSYHYSNGGNPTRVGGVLPEMSAAIAGHASEAAD
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Template Sequence  WEKAKNPVLILGAGVLQDTVAAERARLLAERAKVLAMTPAAN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 
SS

SGGG




SSTT......................................
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   497..500.........510.........520.........530........
 
   421........430.........440.........450.........460.........470.........480.........490...... ...
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Query Sequence  DGGMTAIPVARIVDALENPGGKYQHNGKEQTYPNIKMIWWAGGGNFTHHQDTNRLIKAWQKPEMIVVSECYWTAAA. KHA
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . ARGLEAMGVLPGAKGASWDEPGALYAYYGFVPPEEALKGKRFVVMHLSHLHPLAERYA
Template Known Secondary structure  ......................TTT
S

SSS

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SSSS


TT
S


SS

TT
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   541........550.........560.........570.........580.........590........
 
   500.........510.........520.........530.........540.........550.........560.........570.........
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Query Sequence  DIVLPITTSFERNDLTMTGDYSNQHIVPMKQAVAPQFEARNDFDVFADLAELLKPGGKEIYTEGKDEMAWLKFFYDAAQK
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Template Sequence  HVVLPAPTFYEKRGHLVNLEGR. . . VLPLSPAPIENGEAEGALQVLALLAEALGVRPP. . . . . FRLHLEAQKALK. . . . .
Template Known Secondary structure  S




GGG


TTSB...











S


S.....
SS.....
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   599600.........610.........620 .........630.........640.........650... ......660.....
 
   580.........590.........600.........610.........620.........630.........640.........650.........
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Query Sequence  GARAQRVTMPMFNAFWQQNKLIEMRHSEKNEQYVRYGDFRADPVKNALGTPSGKIEIYSKTLEKFGYKDCPAHPTWLAPD
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Template Conservation  ............................................           ....................     
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ARKVPEAMGRL. . . . . . . . . . . . . . . . . . . . SFRLK
Template Known Secondary structure  ............................................TT


SS
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   666...670...... ...680.
 
   660.........670.........680.........690.........700.........710.........720.........730.........
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Query Sequence  EWKGTADEKQLQLLTAHPAHRLHSQLNYAELRKKYAIADREPITIHTEDAARFGIANGDLVRVWNKRGQILTGAVVTDGI
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Template Sequence  ELRPKERKGAFYL. . . . . . . . RPTMWKAHQAVG. . KAQEAARAWAHPETARAEALPEGAQVAVETPFGRVEARVVHREDV
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S
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SSS
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TT
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   682.......690.... .....700...... ...710.........720.........730.........740.........750.
 
   740.........750
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Query Sequence  KKGVVCVHEGA
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Template Sequence  PKGHLYLSALG
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SS





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   754.....760....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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