Job Description P46923 Confidence 20.94% Date Thu Jan 5 12:04:40 GMT 2012 Rank 185 Aligned Residues 62 % Identity 18% Template c2apoA_ PDB info PDB header:isomerase/rna binding protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of the methanococcus jannaschii cbf52 nop10 complex Resolution 1.95 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		693	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.																	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.													.	740	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	Y	A	I	A	D	R	E	P	I	T	I	H	T	E	D	A	A	R	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	A	N	G	D	L	V	R	V	W	N	K	R	G	Q	I	L	T	G	A	V	V	T	D	G	.	.	.	.	.	.	.	.	.	.	.	.	I	K	K	G	V	V
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	Y	G	L	R	H	L	K	K	V	V	V	K	D	S	A	V	D	A	I	C	H	G	A	D	V	Y	V	R	G	I	A	K	L	S	K	G	I	G	K	G	E	T	V	L	V	E	T	L	K	G	E	A	V	A	V	G	K	A	L	M	N	T	K	E	I	L	N	A	D	K	G	V	A	V	D	V	E	R	V
Template Known Secondary structure		G	G	G	G	T	T	S															T	T					G	G	G						T	T			T	T								T	T	S									S	S									S	S	S
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		745	.	.	.	.	750	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	V	H	E	G	A	W	P	D	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	M	D	R	G	T	Y	P	R	M
Template Known Secondary structure			S		T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions