Job Description P46923 Confidence 100.00% Date Thu Jan 5 12:04:40 GMT 2012 Rank 2 Aligned Residues 765 % Identity 39% Template c1tmoA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:trimethylamine n-oxide reductase; PDBTitle: trimethylamine n-oxide reductase from shewanella massilia Resolution 2.50 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence		A	W	A	E	E	K	G	G	K	I	L	T	A	G	R	W	G	A	M	N	V	E	V	K	D	G	K	I	V	S	S	T	G	A	L	A	K	T	I	P	N	S	L	Q	S	T	A	A	D	Q	V	H	T	T	A	R	I	Q	H	P	M	V	R	K	S	Y	L	D	N	P	L	Q	P	A	K	.	G	R	G	E
Query Conservation																																																																													.
Alig confidence														.	.	.	.																																																												.
Template Conservation														.	.	.	.
Template Sequence		N	E	D	E	W	L	T	T	G	S	H	F	.	.	.	.	G	A	F	K	M	K	R	K	N	G	V	I	A	E	V	K	P	F	D	L	D	K	Y	P	T	D	M	I	N	G	I	R	G	M	V	Y	N	P	S	R	V	R	Y	P	M	V	R	L	D	F	L	L	K	G	H	K	S	N	T	H	Q	R	G	D
Template Known Secondary structure												T	T	.	.	.	.									T	T									T	T		S	S			G	G	G	G	T						S		T	T	B			S											G	G	G	S		G	G	G	T	T	S
Template Predicted Secondary structure														.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.					.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	Y	V	Q	V	S	W	E	Q	A	L	K	L	I	H	E	Q	H	D	R	I	R	K	A	N	G	P	S	A	I	F	A	G	S	Y	G	W	R	S	S	G	V	L	H	K	A	Q	T	L	L	Q	R	Y	M	N	L	A	G	G	Y	S	G	H	S	G	D	Y	S	T	G	A	A	Q	V	I	M	P	H	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	R	F	V	R	V	T	W	D	K	A	L	T	L	F	K	H	S	L	D	E	V	Q	T	Q	Y	G	P	S	G	L	H	A	G	Q	T	G	W	R	A	T	G	Q	L	H	S	S	T	S	H	M	Q	R	A	V	G	M	H	G	N	Y	V	K	K	I	G	D	Y	S	T	G	A	G	Q	T	I	L	P	Y	V
Template Known Secondary structure																											T		G	G	G											S		T	T	T												T	T				B						S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.					.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.		260	.	.
Predicted Secondary structure																																								.	.	.	.																																			.
Query SS confidence																																								.	.	.	.																																			.
Query Sequence		V	G	S	V	E	V	Y	E	Q	Q	T	S	W	P	L	I	L	E	N	S	Q	V	V	V	L	W	G	M	N	P	L	N	T	L	K	I	A	W	.	.	.	.	S	S	T	D	E	Q	G	L	E	Y	F	H	Q	L	K	K	S	G	K	P	V	I	A	I	D	P	I	R	S	E	T	I	E	F	.	F	D	D
Query Conservation																																								.	.	.	.																																			.
Alig confidence																																								.	.	.	.																																			.			.
Template Conservation																																																																																	.
Template Sequence		L	G	S	T	E	V	Y	A	Q	G	T	S	W	P	L	I	L	E	H	S	D	T	I	V	L	W	S	N	D	P	Y	K	N	L	Q	V	G	W	N	A	E	T	H	E	S	F	A	Y	L	A	Q	L	K	E	K	V	K	Q	G	K	I	R	V	I	S	I	D	P	V	V	T	K	T	Q	A	Y	L	G	C	.
Template Known Secondary structure		T	S	S			T	T	S													S						S							T	S			S	S	B				T															T	S	S							S	S									T		.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	T	W	I	A	P	N	M	G	T	D	V	A	L	M	L	G	I	A	H	T	L	M	T	Q	G	K	H	D	K	V	F	L	E	K	Y	T	T	G	Y	P	Q	F	E	E	Y	L	T	G	K	S	D	N	T	P	K	S	A	V	W	A	A	E	I	T	G	V	P	E	A	Q	I	V	K	L	A	E	L	M
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	E	Q	L	Y	V	N	P	Q	T	D	V	T	L	M	L	A	I	A	H	E	M	I	S	K	K	L	Y	D	D	K	F	I	Q	G	Y	S	L	G	F	E	E	F	V	P	Y	V	M	G	T	K	D	G	V	A	K	T	P	E	W	A	A	P	I	C	G	V	E	A	H	V	I	R	D	L	A	K	T	L
Template Known Secondary structure		.	.							T	T																T	T		S																					T	T	T	T	S													T
Template Predicted Secondary structure		.	.
Template SS confidence
				240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.					.	.	.	.	.	.
Predicted Secondary structure																																																																								.	.	.	.
Query SS confidence																																																																								.	.	.	.
Query Sequence		A	A	N	R	T	M	L	M	A	G	W	G	I	Q	R	Q	Q	Y	G	E	Q	K	H	W	M	L	V	T	L	A	A	M	L	G	Q	I	G	T	P	G	G	G	F	G	F	S	Y	H	Y	S	N	G	G	N	P	T	R	V	G	G	V	L	P	E	M	S	A	A	I	A	.	.	.	.	G	H	A	S	E	A
Query Conservation																																																																								.	.	.	.
Alig confidence																																																																								.	.	.	.
Template Conservation
Template Sequence		V	K	G	R	T	Q	F	M	M	G	W	C	I	Q	R	Q	Q	H	G	E	Q	P	Y	W	M	A	A	V	L	A	T	M	I	G	Q	I	G	L	P	G	G	G	I	S	Y	G	H	H	Y	S	S	I	G	V	P	S	S	G	A	A	A	P	G	A	F	P	R	N	L	D	E	N	Q	K	P	L	F	D	S	S
Template Known Secondary structure				S								S	G	G	G	S	S	T	T	T															T		T	T	S	T	T					S		T	T	S	T	T	T	T	S													S	S			T	T				S	S
Template Predicted Secondary structure
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	D	G	G	M	T	A	I	P	V	A	R	I	V	D	A	L	E	N	P	G	G	K	Y	Q	H	N	G	K	E	Q	T	Y	P	N	I	K	M	I	W	W	A	G	G	G	N	F	T	H	H	Q	D	T	N	R	L	I	K	A	W	Q	K	P	E	M	I	V	V	S	E	C	Y	W	T	A	A	A	K	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	F	K	G	A	S	S	T	I	P	V	A	R	W	I	D	A	I	L	E	P	G	K	T	I	D	A	N	G	S	K	V	V	Y	P	D	I	K	M	M	I	F	S	G	N	N	P	W	N	H	H	Q	D	R	N	R	M	K	Q	A	F	H	K	L	E	C	V	V	T	V	D	V	N	W	T	A	T	C	R	F
Template Known Secondary structure				T	T	S		S				G	G	G							S	T	T						S	S	S														S							S	S										T	T		S							S	B							T
Template Predicted Secondary structure
Template SS confidence
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
		499	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	I	V	L	P	I	T	T	S	F	E	R	N	D	L	T	M	T	G	D	Y	S	N	Q	H	I	V	P	M	K	Q	A	V	A	P	Q	F	E	A	R	N	D	F	D	V	F	A	D	L	A	E	L	L	K	P	G	G	K	E	I	Y	T	E	G	K	D	E	M	A	W	L	K	F	F	Y	D	A	A	Q
Query Conservation
Alig confidence																																																											.	.
Template Conservation																																																											.	.
Template Sequence		S	D	I	V	L	P	A	C	T	T	Y	E	R	N	D	I	D	V	Y	G	A	Y	A	N	R	G	I	L	A	M	Q	K	M	V	E	P	L	F	D	S	L	S	D	F	E	I	F	T	R	F	A	A	V	L	G	K	E	.	.	K	E	Y	T	R	N	M	G	E	M	E	W	L	E	T	L	Y	N	E	C	K
Template Known Secondary structure			S					B			G	G	G	S								T	T	T											S				T	T		B													T	T			.	.					T	T
Template Predicted Secondary structure																																																											.	.
Template SS confidence
		478	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.			.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.
		579	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	A	R	A	Q	R	V	T	M	P	M	F	N	A	F	W	Q	Q	N	K	L	I	E	M	R	H	S	E	K	N	E	Q	Y	V	R	Y	G	D	F	R	A	D	P	V	K	N	A	L	G	T	P	S	G	K	I	E	I	Y	S	K	T	L	E	K	F	G	Y	K	D	C	P	A	H	P	T	W	L	A	P
Query Conservation
Alig confidence							.																								.	.	.	.
Template Conservation							.																								.	.	.	.
Template Sequence		A	A	N	A	G	.	K	F	E	M	P	D	F	A	T	F	W	K	Q	G	Y	V	H	F	G	D	G	E	V	.	.	.	.	W	T	R	H	A	D	F	R	N	D	P	E	I	N	P	L	G	T	P	S	G	L	I	E	I	F	S	R	K	I	D	Q	F	G	Y	D	D	C	K	G	H	P	T	W	M	E	K
Template Known Secondary structure					T	T	.	T																							.	.	.	.			T	T							T	T	T	S			S	S	S	S	S	S			S	S						T	T			T	T	S		S	S
Template Predicted Secondary structure							.																								.	.	.	.
Template SS confidence
		556	.	.	.	560		.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.					.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
		659	660	.	.	.	.	.				.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.		.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.
Predicted Secondary structure									.	.	.																															.
Query SS confidence									.	.	.																															.
Query Sequence		D	E	W	K	G	T	A	.	.	.	D	E	K	Q	L	Q	L	L	T	A	H	P	A	H	R	L	H	S	Q	L	N	Y	A	E	L	R	K	K	Y	A	.	I	A	D	R	E	P	I	T	I	H	T	E	D	A	A	R	F	G	I	A	N	G	D	L	V	R	V	W	N	K	R	G	Q	I	L	T	G	A	V
Query Conservation									.	.	.																															.
Alig confidence									.	.	.																															.
Template Conservation
Template Sequence		T	E	R	S	H	G	G	P	G	S	D	K	H	P	I	W	L	Q	S	C	H	P	D	K	R	L	H	S	Q	M	C	E	S	R	E	Y	R	E	T	Y	A	V	N	G	R	E	P	V	Y	I	S	P	V	D	A	K	A	R	G	I	K	D	G	D	I	V	R	V	F	N	D	R	G	Q	L	L	A	G	A	V
Template Known Secondary structure		S	S		S	S	S	S	T	T	T	T	T											S	S	S	B	T	T	B	T	T	T						T	T	T		B	T	T	B													T	T			T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		631	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710
		735	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.													.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	T	D	G	I	K	K	G	V	V	C	V	H	E	G	A	W	P	D	L	.	.	.	.	.	.	.	.	.	.	.	.	E	N	G	L	C	K	N	G	S	A	N	V	L	T	A	D	I	P	S	S	Q	L	A	N	A	C	A	G	N	S	A	L	V	Y	I	E	K	Y	T	G	N	A	P	K	L	T	A	F
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	S	D	N	F	P	K	G	I	V	R	I	H	E	G	A	W	Y	G	P	V	G	K	D	G	S	T	E	G	G	A	E	V	G	A	L	C	S	Y	G	D	P	N	T	L	T	L	D	I	G	T	S	K	L	A	Q	A	C	S	A	Y	T	C	L	V	E	F	E	K	Y	Q	G	K	V	P	K	V	S	S	F
Template Known Secondary structure				T	T	S		T	T						T	T								T	T	S		S	G	G	G	G	S	T	T				S	S			G	G	G	S					B	S		T	T	T			B		T	T											S							S	S
Template Predicted Secondary structure
Template SS confidence
		711	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790
		803	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Q	P	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	G	P	I	E
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		791	.	.	.	.