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Job DescriptionP46923
Confidence100.00%DateThu Jan 5 12:04:40 GMT 2012
Rank7Aligned Residues728
% Identity20%Templatec1h0hA_
PDB info PDB header:dehydrogenaseChain: A: PDB Molecule:formate dehydrogenase (large subunit); PDBTitle: tungsten containing formate dehydrogenase from2 desulfovibrio gigas
Resolution1.8 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   22.......30.........40.........50. ........60........ .70.........80.........90.....
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Query Sequence  TSAAPLPAWAEEKGGKILTAGRWGAMNVEV. . KDGKIVSSTGALAKTIP. . . . NSLQSTAADQVHTTARIQHPMVRKSYL
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Template Sequence  ATMALKTVDAKQTTSVCCYCSVGCGLIVHTDKKTNRAINVEGDPDHPINEGSLCAKGASTWQLAENERRPANPLYRAP. .
Template Known Secondary structure 




TTTTS
SSBTT


TTT


TT
TTTTT


TS
TTS
SS

T..
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   1........10.........20.........30.........40.........50.........60.........70........
 
   96...100.........110.........120.........130.........140. ........150.........160.......
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Query Sequence  DNPLQPAKGRGEDTYVQVSWEQALKLIHEQHDRIRKANGPSAIFAG. . . . . . . . SYGWRSSGVLHKAQTLLQRYMNLAGG
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Template Sequence  . . . . . . . . . . GSDQWEEKSWDWMLDTIAERVAKTREATFVTKNAKGQVVNRCDGIASVGSAAMDNEECWIYQAWLRSLGL
Template Known Secondary structure  ..........T
SS



TTS

S

TTS
TTB
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   7980.........90.........100.........110.........120.........130.........140........
 
   168.170.........180.........190.........200.........210.........220.........230.........240.......
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Query Sequence  YSGHSGDYSTGAAQVIMPHVVGSVEVYEQQTSWPLILENSQVVVLWGMNPLNTLKIAWSSTDEQGLEYFHQLKKSGKPVI
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Template Sequence  FYIEHQARIHSATVAALAESYG. . . . RGAMTNHWIDLKNSDVILMMGSNPAENHPISF. . . . . . . . KWVMRAKDKGATLI
Template Known Secondary structure 


GGG

S....

S
SS
TGGGGG
SS

STT........TT
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   149150.........160.........170 .........180.........190.........200.. .......210......
 
   248.250.........260.........270.........280.........290.........300..
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Query Sequence  AIDPIRSETIEFFDDNATWIAPNMGTDVALMLGIAHTLMTQGKHDKVFLEKYTTG. . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  HVDPRYTRTSTKCD. . . LYAPLRSGSDIAFLNGMTKYILEKELYFKDYVVNYTNASFIVGEGFAFEEGLFAGYNKETRKY
Template Known Secondary structure 
SS

TTGGG
S...


TT
TT
S
BGGGBBB
TT

TTTTTTTT
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   218.220.........230. ........240.........250.........260.........270.........280.........290....
 
   303......310.........320.........330.........340.... .....350
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . YPQFEEYLTGKSDNTPKSAVWAAEITGVPEAQIVKLAELMAA. . . . . NRTMLM
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Template Sequence  DKSKWGFERDENGNPKRDETLKHPRCVFQIMKKHY. . . . . . ERYDLDKISAICGTPKELILKVYDAYCATGKPDKAGTIM
Template Known Secondary structure 
GGGG
B
B
TTS
B
B
TTS
STTB......TT




GGGSTT

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   295....300.........310.........320......... 330.........340.........350.........360........
 
   351........360.........370.........380.........390.........400.........410.........420.......
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Query Sequence  AGWGIQRQQYGEQKHWMLVTLAAMLGQIGTPGGGFGFSYHYSNGGNPTRVGGVLPEMSAAIAGHASEAADDGGMTAI. . .
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Template Sequence  YAMGWTQHTVGVQNIRAMSINQLLLGNIGVAGGGVNALRGEANVQGSTDHGLLMHIYPGYLGTARASIPTYEEYTKKFTP
Template Known Secondary structure 



SSTT
SSSTT
S

SBTTTT
BTTTTT

BTT

S

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   369370.........380.........390.........400.........410.........420.........430.........440........
 
   428.430.........440.........450.........460.........470....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PVARIVDALENPGGKYQHNGKEQTYPNIKMIWWAGGGNFTHHQDTNR
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Template Conservation                                                              

       

    
    
Template Sequence  VSKDPQSANWWSNFPKYSASYIKSMWPDADLNEAYGYLPKGEDGKDYSWLTLFDDMFQGKIKGFFAWGQNPACSGANSNK
Template Known Secondary structure 



TT


GGGG
TTS
S

B
TT


STT


S

SBS
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   449450.........460.........470.........480.........490.........500.........510.........520........
 
   475....480.........490......... 500.........510.........520.........530.........540.
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Query Sequence  LIKAWQKPEMIVVSECYWTAAAKHA. . . . . . . . . . . . . DIVLPITTSFERNDLTMTGDYSNQHIVPMKQAVAPQFEARND
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Template Sequence  TREALTKLDWMVNVNIFDNETGSFWRGPDMDPKKIKTEVFFLPCAVAIEKEGSISNSGRW. . . MQWRYVGPEPRKNAIPD
Template Known Secondary structure  TT
SSS

TTTTGGGSTT

GGG


B

GGG


TT
...

SS


TT
B
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   529530.........540.........550.........560.........570.........580........ .590.........600.....
 
   542.......550.... .....560.........570........ .580.........590.......
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Query Sequence  FDVFADLAELLKP. . . . . . . . . . . . . . . . . . GGKEIYTEGKDEMAWLKFFYDAAQ. . . . . . KGARAQRVTMPMFNAFWQQ
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Template Sequence  GDLIVELAKRVQKLLAKTPGKLAAPVTKLKTDYWVNDHGHFDPHKIAKLINGFALKDFKVGDVEYKAGQQIATFGHLQAD
Template Known Secondary structure  S
TT

S
GGGGB
TTS
B

BBSS
TT
TT
B
S
GGG

TT
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   606...610.........620.........630.........640.........650.........660.........670.........680.....
 
   598.600........ .610.........620......
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Query Sequence  NKLIEMRHSEK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . NEQYVRYGDFRADPVKNA. . . . . . . . . . . . . . . .
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Template Conservation 
                                            
                                  
Template Sequence  GSTTSGCWIYTGSYTEKGNMAARRDKTQTDMQAKIGLYPGWTWAWPVNRRIIYNRASVDLNGKPYAPEKAVVEWNAAEKK
Template Known Secondary structure  S
B

SSGGGTTSTTGGG
B




T

TTBSTTTT
SSTTGGGGB
TTS
BS
GGG
STTTT
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   686...690.........700.........710.........720.........730.........740.........750.........760.....
 
   627..630.........640.........650.........660.....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . LGTPSGKIEIYSKTLEKFGYKDCPAHPTWLAPDEWKGTA. . . . . . . . . . . . . . . . . .
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Template Sequence  WVGDVPDGPWPPQADKEKGKRAFIMKPEGYAYLYGPGRED. . . . . . GPLPEYYEPMECPVIEHPFSKTLHNPTALHFATE
Template Known Secondary structure  S

SS
S

TT
TTT


S
TTSSSS
B
SS
TTSTT......
SS






SSS



SS
S

S
TT

SS

S
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   766...770.........780.........790.........800..... ....810.........820.........830.........
 
   666...670.........680.........690.........700.........710.........720.........730.........
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Query Sequence  . . . . . . DEKQLQLLTAHPAHRLHSQLNYAELRKKYAIADREPITIHTEDAARFGIANGDLVRVWNKRGQILTGAVVTDGI
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Template Sequence  EKAVCDPRYPFICSTYRVTEHWQTGLMTRNTPWLLEAEPQMFCEMSEELATLRGIKNGDKVILESVRGKLWAKAIITKRI
Template Known Secondary structure  S




TTS


TT

TTSTSS
S

T

TT
TT
TT
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   840.........850.........860.........870.........880.........890.........900.........910.........
 
   740.........750. ........760.........770.........780.........790..
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Query Sequence  KKGVVCVHEGAW. . . . . . PDLENGLCKNGSANVLTADIPSSQLANACAGNSALVYIEKY
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Template Sequence  KPFAIQGQQVHMVGIPWHYGWSFPKNGGDAANILTPSV. GNPNTGIPETKAFMVNVTKA
Template Known Secondary structure 

TT
S


TTSSTTS


GGGS

BS.SS
SSBSB

S

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   920.........930.........940.........950....... ..960.........970.......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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