 |
Job Description | P0A836 | Confidence | 61.98% | Date | Thu Jan 5 11:06:47 GMT 2012 |
Rank | 144 | Aligned Residues | 116 |
% Identity | 13% | Template | d1ydha_ |
SCOP info | MCP/YpsA-like
| MCP/YpsA-like
| MoCo carrier protein-like
|
Resolution | 2.15 |
|
 |
  |   |
261 | . | . | . | . | . | . | . | |
. | 270 | |
|
. | . | . | . | . | . | . | . | . | 280 | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|  |  |  | . |  |  | . | . |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
| . |
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
C | M | V | N | G | A | G | L | . |
A | M | . |
. |
G | T | M | D | I | V | K | L | H | G | G | E | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
P | A | N | F | L | D | V | G | G | G | A | T | K | E | R | V | T | E | A | F | K | I | I | L | S | D | D | K | V | K | A | V | L | V | N | I | F | G | G | I | V |
Query Conservation |   |
  |   |   |
|
|
|
|
| . |   |
| . | . |   |
|   |
|   |
|   |   |   |
|
|   | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |
|
|   |   |
|
|
|
|   |
|   |   |
|   |   |   |   |
|
|   |
|   |
|   |
|   |   |
|   |   |
|
|
|   |
|   |
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
| . |
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |
|
|
|   |   |
|
|
|   |
|   |   |   |
|
|   |   |   |
|
|   |
|   |
|
|   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|   |   |   |
|
| . | . | . | . | . |
|   |
|   |
|
|
|
|   |
|
Template Sequence |   |
D | L | V | Y | G | G | G | S | V | G | L | X | G | L | I | S | R | R | V | Y | E | G | G | L | H | V | L | G | I | I | P | K | A | L | X | P | I | E | I | S | G | E | T | V | G | D | V | R | V | V | A | D | X | H | E | R | K | A | A | X | A | Q | E | A | E | . |
. |
. |
. |
. |
A | F | I | A | L | P | G | G | Y | G |
Template Known Secondary structure |   |
 |  |  |  |
|
|
| S | S |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |  | G | G | G |  |  |  |  |
|
| S | S |
|
| S |  |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  |  |
| S | . | . | . | . | . |  |  |  |  |
| S |
| S |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
| . | . | . | . | . |  |  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
43 | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | |
|
|
|
|
. | . | 110 | . | . | . | . | . | . | . |
  |
  |   |
324 | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | |
|
. | 360 | . | . | . | . | . | . | |
|
|
|
|
|
|
. | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  | . | . |  |  |  |  |  |
|
|
| . | . | . | . | . | . | . |
|  |  |  |
|
|
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | C | D | L | I | A | D | G | I | I | G | A | V | A | E | V | G | V | N | V | P | V | V | V | R | L | E | G | N | N | A | E | L | G | A | . |
. |
K | K | L | A | D | S | G | L | . |
. |
. |
. |
. |
. |
. |
N | I | I | A | A | K | G | L | T | D | A | A | Q | Q | V |
Query Conservation |   |
  |   |   |   |
|
|   |   |
|
|   |
|   |   |   |   |   |   |   |   |
|
|
|   |   |
|   |
|   |   |   |   |
|   |   | . | . |   |   |
|   |   |   |
|
| . | . | . | . | . | . | . |
|   |   |   |   |   |   |   |   |   |
|
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|   |
|   |
|
|   |   |
|
|
|   |   |   |
|
|
|
|
|
|
|   |   |
|   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |
|
Template Sequence |   |
T | X | E | E | L | L | E | X | I | T | W | S | Q | L | G | I | H | K | K | T | V | G | L | L | N | V | D | G | Y | Y | N | N | L | L | A | L | F | D | T | G | V | E | E | G | F | I | K | P | G | A | R | N | I | V | V | S | A | P | T | A | K | E | L | X | E | K | X |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  | T | S |
|
|
|  |  |  |  |  |
| G | G | G | T | T |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S | S |
|  |  |  |  | T | T |  |  |  |  | S | S |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
118 | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|