Return to main results Retrieve Phyre Job Id

Job DescriptionP0A836
Confidence21.25%DateThu Jan 5 11:06:47 GMT 2012
Rank316Aligned Residues110
% Identity10%Templated1gcaa_
SCOP infoPeriplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like
Resolution1.70

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   271........280.........290.........300.........310.........320.........330.........340.........350
Predicted Secondary structure 





























Query SS confidence 















































































Query Sequence  GTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLE
Query Conservation   
 
 
   

  

  



 
  
    

 
 
 
  
  


 
 


     

  

 
        


  
 
Alig confidence 













































....





























Template Conservation 
    
                            
           ....
       
  
             
 
 
Template Sequence  YVVKELNDKGIQTEQLALDTAMWDTAQAKDKMDAWLSGPNANKIEV. . . . VIANNDAMAMGAVEALKAHNKSSIPVFGVD
Template Known Secondary structure  TT


TT
TSTTGGG

....SSTT
TTS

SB
Template Predicted Secondary structure 



















....








Template SS confidence 















































































   161........170.........180.........190.........200...... ...210.........220.........230......
 
   351........360.........370.........380......
Predicted Secondary structure 









Query SS confidence 



































Query Sequence  GNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAAVE
Query Conservation 
    
    
   


         

   
    
Alig confidence 

..































Template Conservation    ..      
  
    

 
     
  
   
 
Template Sequence  AL. . PEALALVKSGAMAGTVLNDANNQAKATFDLAK
Template Known Secondary structure 

..TSS
B

Template Predicted Secondary structure 

..







Template SS confidence 



































   237. .240.........250.........260.........270
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions