 |
Job Description | P0A836 | Confidence | 34.57% | Date | Thu Jan 5 11:06:47 GMT 2012 |
Rank | 239 | Aligned Residues | 94 |
% Identity | 15% | Template | c3m2tA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:probable dehydrogenase; |
PDBTitle: the crystal structure of dehydrogenase from chromobacterium2 violaceum
|
Resolution | 2.30 Å |
|
 |
  |   |
258 | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | |
|
. | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
| . | . |
|
|
|  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | I | G | C | M | V | N | G | A | G | L | A | M | G | T | M | D | I | V | K | L | H | G | G | E | P | A | N | F | L | D | V | G | G | . |
. |
G | A | T | K | E | R | V | T | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
E | A | F | K | I | I | L | S | D | D | K | V | K | A | V | L | V | N | I | F | G | G | I | V |
Query Conservation |   |
  |
|
|   |   |   |
|
|
|
|
|   |
|   |
|   |
|   |
|   |   |   |
|
|   |   |
|
|   |   |
|
|
|
| . | . |   |
|   |   |
|   |   |   | . | . | . | . | . | . | . | . | . | . | . | . |   |
|
|   |
|   |
|   |
|   |   |
|   |   |
|
|
|   |
|   |
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
| . | . |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
Template Conservation |   |
|
|
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   | . | . | . | . | . |   |   |
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |
|
|   |
|   |
| . | . | . | . | . |   |
|
Template Sequence |   |
K | V | G | L | V | G | I | G | A | Q | X | Q | E | N | L | L | P | S | L | L | Q | X | Q | D | . |
. |
. |
. |
. |
I | R | I | V | A | A | C | D | S | D | L | E | R | A | R | R | V | H | R | F | I | S | D | I | P | V | L | D | N | V | P | A | X | L | N | Q | V | P | L | D | A | V | V | X | . |
. |
. |
. |
. |
A | G |
Template Known Secondary structure |   |
 |  |  |  |  |
|
| S |  |  |  |  |  | T |  |  |  |  |  |  | T |
| T | T | . | . | . | . | . |  |  |  |  |  |  |  |
| S | S |  |  |  |  | G | G | G | G | G | T | S |
| S |
|
|  |  | S | S |  |  |  |  |  |  |  | S |
|
| S |  |  |  |  | . | . | . | . | . |
| S |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . | . |
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  | . | . | . | . | . |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
5 | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | |
|
|
|
|
. | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | |
|
|
|
|
. | . |
  |
  |   |
324 | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | |
. | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  | . |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | C | D | L | I | A | D | G | I | I | G | A | V | A | E | V | G | V | N | V | P | V | V | V | . |
R | L | E | G | N | N | A | E | L | G | A | K | K | L | A | D | S |
Query Conservation |   |
  |   |   |   |
|
|   |   |
|
|   |
|   |   |   |   |   |   |   |   |
|
|
|   | . |   |
|   |
|   |   |   |   |
|   |   |   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |
|   |   |   |   |   |   |
|
|   | . | . | . |   |
|
|
|
|
|   |
|
|
|   |
|   |   |   |   |
|
|   |   |
|   |   |   |
|
Template Sequence |   |
P | P | Q | L | H | F | E | X | G | L | L | A | X | S | . |
. |
. |
K | G | V | N | V | F | V | E | K | P | P | C | A | T | L | E | E | L | E | T | L | I | D | A | A |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | T | T |
|  |  |  |  |
| S |
| S |
| S | S |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  | . | . | . |  |
|
|
|  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
75 | . | . | . | . | 80 | . | . | . | . | . | . | . | . | |
|
|
. | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|