|   |
6 | . | . | . | 10 | . | . | . | . | |
|
|
|
|
|
|
. | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |
|
|
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Y | Q | A | K | Q | L | F | A | R | . |
. |
. |
. |
. |
. |
. |
Y | G | L | P | A | P | V | G | Y | A | C | T | T | P | R | E | A | E | E | A | A | S | K | I | G | A | G | P | W | V | V | K | C | Q | V | H | A | G | G | R | G | K | A | G | G | V | K | V | V | N | S | K | E | D | I | R | A | F | A | E | N | W | L | G |
Query Conservation |   |
  |
|
|
|   |
|
|   |   | . | . | . | . | . | . | . |
|
|
|
|
|
|   |   |   |   |   |   |   |   |
|
|
|   |   |   |
|   |   |
|
|   |   |
|
|
|
|
|   |
|
|   |   |
|   |
|   |
|   |
|
|
|   |
|   |   |   |   |
|
|   |   |   |   |
|   |   |
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
Template Conservation |   |
  |   |   |   |   |   |
|   |   |   |   |
|
|   |
|   |   |   |
|   |   |
|   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |
|   |
|
|
|
|   |   |
|   |
|   |   |
|   | . | . |   |
|   |
|
|   |   |   |
|   |
|   |   |
| . | . | . | . | . | . |
Template Sequence |   |
S | K | S | Y | E | L | I | R | K | I | E | A | Y | M | E | D | D | R | I | C | S | P | P | F | M | E | L | T | S | L | C | T | M | R | L | L | E | K | N | G | L | T | F | P | F | I | C | K | T | R | V | A | H | G | T | N | S | H | . |
. |
E | M | A | I | V | F | N | Q | E | G | L | N | A | I | . |
. |
. |
. |
. |
. |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| T | T | B |
|
|
|
|  |  |  |  |
| S |
|
|
|  |  |  |  |  |  | T | T |
|
| S | S |  |  |  |  |  | S | B |
| S | S | T | T | T | T | . | . |  |  |  |  |  |
| S | G | G | G | G | T | T |
| . | . | . | . | . | . |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|  | . | . |  |  |  |  |  |  |
|  |  |  |  |
|
|
| . | . | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
107 | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | |
|
. | . | . | . | . | 170 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
  |
  |   |
79 | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
. | . | . | . | 110 | . | . | . | . | . | . | |
|
|
|
|
|
. | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
| . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | R | L | V | T | Y | Q | T | D | A | N | G | Q | P | V | N | Q | I | L | V | E | A | A | T | D | I | A | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
K | E | L | Y | L | G | A | V | V | D | R | . |
. |
. |
. |
. |
. |
S | S | R | R | V | V | F | M | A | S | T | E | G | G | V | E | I | E | K | V | A | E | E | T | P | H |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|
|
|
|   |   |
|   |   |   | . | . | . | . | . | . | . | . | . | . |   |
|
|
|
|
|
|   |   |
|   | . | . | . | . | . | . |   |   |
|   |   |
|
|   |
|
|   |   |
|
|
|   |
|
|   |   |   |
|   |   |   |   |
Alig confidence |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |
|   |
|
|
|
|   |   |   |   |   |   |   |
|
|   |
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Q | P | P | C | V | V | Q | N | F | I | N | H | N | A | V | L | Y | K | V | F | V | V | G | E | S | Y | T | V | V | Q | R | P | S | L | K | N | F | S | A | G | T | S | D | R | E | S | I | F | F | N | S | H | N | V | S | K | P | S | S | S | V | L | T | E | L | D |
Template Known Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . |
| S | S |  |  |  |  |  |
|
|
|
| T | T |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |
|
|
|
|
|
| S | S |
|
| S |
|
|
|  |  |  |  | G | G | G | T | S |
|
|
|
|
| G | G | G | S |
| S |
Template Predicted Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
182 | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . |
  |
  |   |
143 | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|  |  |  |
|
|
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | I | H | K | V | A | L | D | P | L | T | G | P | M | P | Y | Q | G | R | E | L | A | F | K | L | G | L | E | G | K | L | V | Q | Q | F | T | K | I | F | M | G | L | A | T | I | F | L | E | R | D | L | A | L | I | E | I | N | P | L | V | I | T | K | Q | G | D | L | I | C | L | D |
Query Conservation |   |
  |
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |
|   |   |
|   |
|   |   |   |
|
|
|
|
|
|   |
|   |   |
|
|   |   |
|
|
|
|
Alig confidence |   |
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |   |   |   |   |
| . |
|
|   |
|   |
|
|
|
| . | . |
|   |   |   |   |   |
|   |   |   |
|
|
|
Template Sequence |   |
K | I | E | G | V | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
F | E | R | P | S | D | E | V | I | R | E | L | S | R | A | L | R | Q | A | L | . |
G | V | S | L | F | G | I | D | I | . |
. |
I | I | N | N | Q | T | G | Q | H | A | V | I | D |
Template Known Secondary structure |   |
S |
|
| S |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |
|
|
|  |  |  |  |  |  | . | . |  |  |
| T | T | T |
|
|  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |
|
|
|  |  |  |  |  |  | . | . |  |  |  |
|
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
249 | 250 | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | |
. | . | . | . | . | . | 280 | . | . | |
|
. | . | . | . | . | . | . | 290 | . | . | . | . | . |
  |