Job Description P0A836 Confidence 98.52% Date Thu Jan 5 11:06:47 GMT 2012 Rank 45 Aligned Residues 156 % Identity 17% Template c2pvpB_ PDB info PDB header:ligase Chain: B: PDB Molecule:d-alanine-d-alanine ligase; PDBTitle: crystal structure of d-alanine-d-alanine ligase from helicobacter2 pylori Resolution 2.40 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Q	A	K	Q	L	F	A	R	Y	G	L	P	A	P	V	G	Y	A	C	T	T	P	R	E	A	E	E	A	A	S	K	I	G	A	G	P	W	V	V	K	C	Q	V	H	A	G	G	R	G	K	A	G	G	V	K	V	V	N	S	K	E	D	I	R	A	F	A	E	N	W	L	G	K	R	L	V	T	Y	Q
Query Conservation
Alig confidence																																																			.	.	.	.																							.	.	.	.	.
Template Conservation																																																			.	.	.	.																							.	.	.	.	.
Template Sequence		Y	L	T	K	L	Y	A	K	D	L	G	I	K	T	L	D	Y	V	L	L	N	E	K	N	R	A	N	A	L	D	L	M	N	F	N	F	P	F	I	V	K	P	S	N	A	G	S	S	L	.	.	.	.	G	V	N	V	V	K	E	E	K	E	L	I	Y	A	L	D	S	A	F	E	Y	S	.	.	.	.	.
Template Known Secondary structure											T	T		B									T	T	T						T	T					S							S	S		S	T	T	T	.	.	.	.	T						S	T												T	T		.	.	.	.	.
Template Predicted Secondary structure																																																			.	.	.	.																							.	.	.	.	.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.					180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	A	N	G	Q	P	V	N	Q	I	L	V	E	A	A	T	D	I	A	K	E	L	Y	L	G	A	V	V	D	R	S	S	R	R	V	V	F	M	A	S	T	E	G	G	V	E	I	E	K	V	A	E	E	T	P	H	L	I	H	K	V	A	L	D	P	L	T	G	P	M	P	Y	Q	G	R	E	L	A	F
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Conservation		.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Sequence		.	.	.	.	.	.	.	.	K	E	V	L	I	E	P	F	I	Q	G	V	K	E	Y	N	L	A	G	C	K	I	K	.	.	.	.	.	.	.	.	.	.	.	.	K	D	F	C	F	S	Y	I	E	E	P	N	K	Q	P	K	A	S	L	S	N	A	L	E	E	Q	L	K	E	.	N	F	K	K	L	Y	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	S									T	T												T	.	.	.	.	.	.	.	.	.	.	.	.	T								B		T	T																		.							T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.																														.
Template SS confidence
										202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.													.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.		.	.	.	.	.	.	260
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	G	L	E	G	K	L	V	Q	Q	F	T	K	I	F	M	G	L	A	T	I	F	L	E	R	D	L	A	L	I	E	I	N	P
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.
Template Sequence		D	L	F	D	G	A	I	I	R	C	D	F	.	.	.	.	.	.	.	.	.	F	V	I	E	N	E	V	Y	L	N	E	I	N	P
Template Known Secondary structure		T	T	T	T	T								.	.	.	.	.	.	.	.	.				T	T									S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.										290	.	.	.	.	.	.	.	.	.	300	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions