Job Description P0A836 Confidence 98.55% Date Thu Jan 5 11:06:47 GMT 2012 Rank 43 Aligned Residues 166 % Identity 17% Template c2dlnA_ PDB info PDB header:ligase(peptidoglycan synthesis) Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: vancomycin resistance: structure of d-alanine:d-alanine2 ligase at 2.3 angstroms resolution Resolution 2.30 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.								.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.
Query Sequence		Y	Q	A	K	Q	L	F	A	R	Y	G	L	P	A	P	V	G	Y	A	C	T	T	P	R	E	A	E	.	.	.	.	.	.	.	E	A	A	S	K	I	G	A	G	P	W	V	V	K	C	Q	V	H	A	G	G	R	G	K	A	G	G	V	K	V	V	N	S	K	E	D	I	R	A	F	A	E	N	W	L	G
Query Conservation																													.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.								.															.	.	.	.
Template Conservation																																											.															.	.	.	.
Template Sequence		L	R	S	K	L	L	W	Q	G	A	G	L	P	V	A	P	W	V	A	L	T	R	A	E	F	E	K	G	L	S	D	K	Q	L	A	E	I	S	A	L	G	.	L	P	V	I	V	K	P	S	R	E	G	S	S	V	.	.	.	.	G	M	S	K	V	V	A	E	N	A	L	Q	D	A	L	R	L	A	F	Q
Template Known Secondary structure											T	T			B													S				T	T	T						T	T		.	S	S						S	S			T	T	T	.	.	.	.	T					S	S	G	G	G										T
Template Predicted Secondary structure																																											.															.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.					.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	L	V	T	Y	Q	T	D	A	N	G	Q	P	V	N	Q	I	L	V	E	A	A	T	D	I	A	K	E	L	Y	L	G	A	V	V	D	R	S	S	R	R	V	V	F	M	A	S	T	E	G	G	V	E	I	E	K	V	A	E	E	T	P	H	L	I	H	K	V	A	L	D	P	L	T	G	P	M	P	Y
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.											.																						.	.																									.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.											.																						.	.																									.	.	.	.	.	.	.
Template Sequence		H	D	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	V	L	I	E	K	W	L	S	.	G	P	E	F	T	V	A	I	L	G	E	E	I	L	P	S	I	R	I	Q	P	.	.	S	G	T	F	Y	D	Y	E	A	K	Y	L	S	D	E	T	Q	Y	F	C	P	A	G	L	.	.	.	.	.	.	.
Template Known Secondary structure		T		.	.	.	.	.	.	.	.	.	.	.	.	.	S										.	S									T	T											.	.	S	S	S	S								S		S						S	S				.	.	.	.	.	.	.
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.											.																						.	.																									.	.	.	.	.	.	.
Template SS confidence
		173	.														.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.			.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	R	E	L	A	F	K	L	G	L	E	G	K	L	V	Q	Q	F	T	K	I	F	M	G	L	A	T	I	F	L	E	R	D	L	A	L	I	E	I	N	P	L	V	I	T	K	Q	G	D	L	I	C	L	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	E	A	S	Q	E	A	N	L	Q	A	L	V	L	K	A	W	T	T	L	G	C	K	G	W	G	R	I	D	.	.	.	V	M	L	D	S	D	G	Q	F	Y	L	L	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.		T	T																	T			S						.	.	.					T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Template SS confidence
													230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.				.	.	260	.	.	.	.	.	.	.	.	.	270

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions