Job Description P0A836 Confidence 98.12% Date Thu Jan 5 11:06:47 GMT 2012 Rank 64 Aligned Residues 170 % Identity 19% Template c1e4eB_ PDB info PDB header:ligase Chain: B: PDB Molecule:vancomycin/teicoplanin a-type resistance protein vana; PDBTitle: d-alanyl-d-lacate ligase Resolution 2.5 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Q	A	K	Q	L	F	A	R	Y	G	L	P	A	P	V	G	Y	A	C	T	T	P	R	E	A	E	E	A	A	S	K	I	G	A	G	P	W	V	V	K	C	Q	V	H	A	G	G	R	G	K	A	G	G	V	K	V	V	N	S	K	E	D	I	R	A	F	A	E	N	W	L	G	K	R	L	V	T	Y	Q
Query Conservation
Alig confidence																												.	.							.															.	.	.	.																							.	.	.	.	.
Template Conservation																												.	.							.															.	.	.	.																							.	.	.	.	.
Template Sequence		S	L	T	Y	I	V	A	K	N	A	G	I	A	T	P	A	F	W	V	I	N	K	D	D	R	P	.	.	V	A	A	T	F	T	.	Y	P	V	F	V	K	P	A	R	S	G	S	S	F	.	.	.	.	G	V	K	K	V	N	S	A	D	E	L	D	Y	A	I	E	S	A	R	Q	Y	D	.	.	.	.	.
Template Known Secondary structure											T	T											S	S				.	.		G	G	G	S		.	S	S						S	S			T	T	T	.	.	.	.	T						S	G	G	G									T	T	T		.	.	.	.	.
Template Predicted Secondary structure																												.	.							.															.	.	.	.																							.	.	.	.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.			160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.					180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.				.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																																	.	.	.
Query SS confidence																																	.	.	.
Query Sequence		T	D	A	N	G	Q	P	V	N	Q	I	L	V	E	A	A	T	D	I	A	K	E	L	Y	L	G	A	V	V	D	R	.	.	.	S	S	R	R	V	V	F	M	A	S	T	E	G	G	V	E	I	E	K	V	A	E	E	T	P	H	L	I	H	K	V	A	L	D	P	L	T	G	P	M	P	Y	Q	G	R	E
Query Conservation																																	.	.	.
Alig confidence		.	.	.	.	.	.	.	.											.													.	.	.																																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.											.																																																			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	S	K	I	L	I	E	Q	A	V	S	.	G	C	E	V	G	C	A	V	L	G	N	S	A	A	L	V	V	G	E	V	D	Q	I	R	L	Q	Y	G	I	F	R	I	H	Q	E	V	E	P	E	K	G	S	E	N	A	V	I	T	V	P	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	S	S									.	S											T	T													S	S	S				G	G	G	S	S	S	G	G	G			S	S					S	S	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.											.																																																			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
										202	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	F	K	L	G	L	E	G	K	L	V	Q	Q	F	T	K	I	F	M	G	L	A	T	I	F	L	E	R	D	L	A	L	I	E	I	N	P	L	V	I	T	K	Q	G	D	L	I	C	L	D	G
Query Conservation
Alig confidence		.	.	.	.																																.	.	.
Template Conservation		.	.	.	.																																.	.	.
Template Sequence		.	.	.	.	A	D	L	S	A	E	E	R	G	R	I	Q	E	T	V	K	K	I	Y	K	T	L	G	C	R	G	L	A	R	V	D	.	.	.	M	F	L	Q	D	R	G	R	I	V	L	N	E	V
Template Known Secondary structure		.	.	.	.		S	S																			T	T									.	.	.					T	T
Template Predicted Secondary structure		.	.	.	.																																.	.	.
Template SS confidence
						262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.				.	.	.	.	.	.	.	300	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions