Job Description P02931 Confidence 100.00% Date Thu Jan 5 10:57:44 GMT 2012 Rank 8 Aligned Residues 277 % Identity 14% Template d3prna_ SCOP info Transmembrane beta-barrels Porins Porin Resolution 1.90

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	L	Y	G	K	A	V	G	L	H	Y	F	S	K	G	N	G	E	N	S	Y	G	G	N	G	D	M	T	Y	A	R	L	G	F	K	G	E	T	Q	I	N	S	D	L	T	G	Y	G	Q	W	E	Y	N	F	Q	G	N	N	S	E	G	A	D	A	Q	T	G	N	K	T	R	L	A	F	A	G	L	K	Y
Query Conservation
Alig confidence																												.																																.	.	.	.	.
Template Conservation																												.																																.	.	.	.	.
Template Sequence		I	S	L	N	G	Y	G	R	F	G	L	Q	Y	V	E	D	R	G	V	G	L	E	D	T	I	I	.	S	S	R	L	R	I	N	I	V	G	T	T	E	T	D	Q	G	V	T	F	G	A	K	L	R	M	Q	W	D	D	G	.	.	.	.	.	D	A	F	A	G	T	A	G	N	A	A	Q	F	W	T	S	Y
Template Known Secondary structure																T	T		S	T	T			S				.															T	T	S													T	T	.	.	.	.	.		G	G	G				B
Template Predicted Secondary structure																												.																																.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.						.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.												.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	D	V	G	S	F	D	Y	G	R	N	Y	G	V	V	Y	D	A	L	G	Y	T	D	M	L	P	E	F	G	G	.	.	.	.	.	.	.	.	.	.	.	D	T	A	Y	S	D	D	F	F	V	G	R	V	G	G	V	A	T	Y	R	N	S	N	F	F	G	L	V	D	G	L	N	F	A	V	Q	Y	L	G
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.																													.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Template Conservation			.																																																																.	.	.	.
Template Sequence		N	.	G	V	T	V	S	V	G	N	V	D	T	A	F	D	S	V	A	L	T	Y	D	S	E	M	G	Y	E	W	S	S	F	G	D	A	Q	S	S	F	F	A	Y	N	S	K	Y	D	A	S	G	A	L	D	N	Y	N	G	I	A	V	T	Y	S	I	.	.	.	.	S	G	V	N	L	Y	L	S	Y	V	D
Template Known Secondary structure		T	.	T							S								S	S	S	T	T	T	T		B	T	T	T	T	B		T	T	S			S								S			T	T	S	T	T	T	T											.	.	.	.	S	S
Template Predicted Secondary structure			.																																																																.	.	.	.
Template SS confidence
		76		.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.					140	.	.	.	.	.	.	.	.	.	150
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	N	E	R	D	T	A	R	R	S	N	G	D	G	V	G	G	S	I	S	Y	E	Y	E	G	F	G	I	V	G	A	Y	G	A	A	D	R	T	N	L	Q	E	A	Q	P	L	G	N	G	K	K	A	E	Q	W	A	T	G	L	K	Y	D	A	N	N	I	Y	L	A	A	N	Y	G	E	T	R	N	A	T	P
Query Conservation
Alig confidence										.																															.	.	.	.	.	.	.	.	.	.																														.	.
Template Conservation										.																															.	.	.	.	.	.	.	.	.	.																														.	.
Template Sequence		P	D	Q	T	V	D	S	S	.	L	V	T	E	E	F	G	I	A	A	D	W	S	N	D	M	I	S	L	A	A	A	Y	T	T	D	A	G	G	I	.	.	.	.	.	.	.	.	.	.	V	D	N	D	I	A	F	V	G	A	A	Y	K	F	N	D	A	G	T	V	G	L	N	W	Y	D	N	G	L	.	.
Template Known Secondary structure		T	T	T	T	S		G	G	.	G	S													S	S										S	G	G	G		.	.	.	.	.	.	.	.	.	.	T	T													S	S	S											T	T	.	.
Template Predicted Secondary structure										.																															.	.	.	.	.	.	.	.	.	.																														.	.
Template SS confidence
		151	.	.	.	.	.	.	.		.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.											.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	N	K	F	T	N	T	S	G	F	A	N	K	T	Q	D	V	L	L	V	A	Q	Y	Q	F	D	F	G	L	R	P	S	I	A	Y	T	K	S	K	A	K	D	V	E	G	I	G	D	V	D	L	V	N	Y	F	E	V	G	A	T	Y	Y	F	N	K	N	M	S	T	Y	V	D	Y	I	I	N	Q	I	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																		.												.	.	.	.	.	.	.	.																													.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																		.												.	.	.	.	.	.	.	.																													.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	S	T	A	G	D	Q	V	T	L	Y	G	N	Y	A	F	G	A	.	T	T	V	R	A	Y	V	S	D	I	D	.	.	.	.	.	.	.	.	R	A	G	A	D	T	A	Y	G	I	G	A	D	Y	Q	F	A	E	G	V	K	V	S	G	S	V	Q	S	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	S	T	T		S											T	T	.												.	.	.	.	.	.	.	.	S	T	T															T	T										.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																		.												.	.	.	.	.	.	.	.																													.	.	.	.
Template SS confidence
													218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.									.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	N	K	L	G	V	G	S	D	D	T	V	A	V	G	I	V	Y	Q	F
Query Conservation
Alig confidence		.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	G	F	A	N	E	T	V	A	D	V	G	V	R	F	D	F
Template Known Secondary structure		.	.	.	.	.		T	T
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions