Return to main results Retrieve Phyre Job Id

Job DescriptionP02931
Confidence14.81%DateThu Jan 5 10:57:44 GMT 2012
Rank52Aligned Residues158
% Identity13%Templated2gufa1
SCOP infoTransmembrane beta-barrels Porins Ligand-gated protein channel
Resolution1.95

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   194.....200.........210.........220........ .230.........240.........250.........260.......
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Query Sequence  DGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLG. . . . . . NGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFT
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Template Sequence  KQWEGAFEGLTAGVNWRISGYRNDVSDLIDYDDHTLKYYNEGKARIKGVEATANFDTGPLTHTVSYDYVDARNAIT. . . .
Template Known Secondary structure  TTTTTTTTTTT....
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   416...420.........430.........440.........450.........460.........470.........480.........490.
 
   268.270.........280.........290.........300.........310. ........320.........330.........340
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Query Sequence  NTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDV. . . . . . . DLVNYFEVGATYYFNKNMSTYVDYIINQI
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Template Sequence  DTPLLRRAKQQVKYQLDWQLYD. FDWGITYQYLGTRYDKDYSSYPYQTVKMGGVSLWDLAVAYPVTSHLTVRGKIA. . . .
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   492.......500.........510... ......520.........530.........540.........550.........560......
 
   341........350.........360..
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Query Sequence  DSDNKLGVGSDDTVAVGIVYQF
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Template Sequence  . . NLFDKDYAGREYTLSGSYTF
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   567..570.........580......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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