Return to main results Retrieve Phyre Job Id

Job DescriptionP02931
Confidence16.41%DateThu Jan 5 10:57:44 GMT 2012
Rank50Aligned Residues131
% Identity15%Templated1fepa_
SCOP infoTransmembrane beta-barrels Porins Ligand-gated protein channel
Resolution2.40

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  KAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEG. . . .
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Template Sequence  KAVVEGLEGSLNVPVSETVXWTNNITYXLKSENKTTGDRLSIIPEYTLNSTLSWQAREDLSXQTTFTWYGKQQPKKYNYK
Template Known Secondary structure  TTTTT


SS


STT

B


SB
TT
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   560.........570.........580.........590.........600.........610.........620.........630.........
 
   308.310.........320.........330.........340.........350.. .....
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Query Sequence  . . . . . . . . IGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDD. . . . . . . . . . . . . . . . . . . . . . TVAVG
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Template Conservation                
   

   
       
   
 



  
                             

     
Template Sequence  GQPAVGPETKEISPYSIVGLSATWDVTKNVSLTGGVDNLFDKRLWRAGNAQTTGDLAGANYIAGAGAYTYNEPGRTWYXS
Template Known Secondary structure  S
B

GGGG

B


SSSSTT


B


S
SS

TTSSS


TT



B


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   640.........650.........660.........670.........680.........690.........700.........710.........
 
   358.360..
Predicted Secondary structure 
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Query Sequence  IVYQF
Query Conservation   
  
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Template Conservation    
 
Template Sequence  VNTHF
Template Known Secondary structure 
Template Predicted Secondary structure 
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   720....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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