Job Description P02931 Confidence 80.20% Date Thu Jan 5 10:57:44 GMT 2012 Rank 44 Aligned Residues 290 % Identity 9% Template c3rbhC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:alginate production protein alge; PDBTitle: structure of alginate export protein alge from pseudomonas aeruginosa Resolution 2.30 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.			.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure																																									.																				.	.
Query SS confidence																																									.																				.	.
Query Sequence		D	L	Y	G	K	A	V	G	L	H	Y	F	S	K	G	N	G	E	N	S	Y	G	G	N	G	D	M	T	Y	A	R	L	G	F	K	G	E	T	Q	.	I	N	S	D	L	T	G	Y	G	Q	W	E	Y	N	F	Q	G	N	N	.	.	S	E	G	A	D	A	Q	T	G	N	K	T	R	L	A	F	A	G	L
Query Conservation																																									.																				.	.
Alig confidence																						.																			.																				.	.
Template Conservation																						.
Template Sequence		N	F	G	L	D	V	K	I	T	G	E	S	E	N	D	R	D	L	G	T	.	A	P	G	G	T	L	N	D	I	G	I	D	L	R	P	W	A	F	G	Q	W	G	D	W	S	A	Y	F	X	G	Q	A	V	A	A	T	D	T	I	E	T	D	T	L	P	D	K	S	Y	L	A	A	R	E	F	W	V	D	Y
Template Known Secondary structure																	T	T	S	S	S	.	S	S																				T	T													S	S	S									S
Template Predicted Secondary structure																						.
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		111	.	.				.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.
Query SS confidence					.	.	.
Query Sequence		K	Y	A	.	.	.	D	V	G	S	F	D	Y	G	R	N	Y	G	V	V	Y	D	A	L	G	Y	T	D	M	L	P	E	F	G	G	D	T	A	Y	S	D	D	F	F	V	G	R	V	G	G	V	A	T	Y	R	N	S	N	F	F	G	L	V	D	G	L	N	F	A	V	Q	Y	L	G	K	N	E	R	D	T
Query Conservation					.	.	.
Alig confidence					.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	G	L	T	A	Y	P	G	E	H	L	R	F	G	R	Q	R	L	R	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	S	G	Q	W	Q	D	T	N	I	E	A	L	N	W	S	F	E	T	T	L	L	N	A	H	A	G	V	A	Q	R	F	S	E	Y	R	T	D	L	D	E	L	A
Template Known Secondary structure				S	S	S		T	T													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S	S	S	B														S	S											S				B	T	T			S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.																		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		A	R	R	S	N	G	D	G	V	G	G	S	I	S	Y	E	Y	.	E	G	F	G	I	V	G	A	Y	G	A	A	D	R	T	N	L	Q	E	A	Q	P	L	G	N	G	K	K	A	E	Q	W	A	T	G	L	K	Y	D	A	N	N	I	Y	L	A	A	N	Y	G	E	T	R	N	A	T	P	I	T	N	K	F
Query Conservation																			.
Alig confidence																			.
Template Conservation
Template Sequence		P	E	D	K	D	R	T	H	V	F	G	D	I	S	T	Q	W	A	P	H	H	R	I	G	V	R	I	H	H	A	D	D	S	D	K	T	Y	T	G	Q	L	T	W	L	G	I	E	A	T	G	D	A	Y	N	Y	R	S	S	X	P	L	N	Y	W	A	S	A	T	W	L	T	G	D	R	D	N	L	T	Q	S
Template Known Secondary structure		T	T	T	T	T														T	T																S															S	T	T		T	T		S		S
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.																															.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	N	T	S	G	F	A	N	K	T	Q	D	V	L	L	V	A	Q	Y	Q	F	D	F	G	L	R	P	S	I	A	Y	T	K	S	K	A	K	D	V	E	G	I	G	D	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	N	Y
Query Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.
Template Sequence		G	.	.	.	.	.	D	V	N	A	F	G	V	D	L	G	L	R	W	N	I	D	E	Q	W	K	A	G	V	G	Y	A	R	G	S	G	G	G	K	D	G	E	E	Q	F	Q	Q	T	G	L	E	S	N	R	S	N	F	T	G	T	R	S	R	V	H	R	F	G	E	A	F	R	G	E	L	S	N	L	Q	A
Template Known Secondary structure			.	.	.	.	.																S	S	S														S	G	G	G	T	T						S	B							T	T	S	S	S	S				T	T		T	T	T				S	S	S
Template Predicted Secondary structure			.	.	.	.	.
Template SS confidence
		305						.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	E	V	G	A	T	Y	Y	F	N	K	N	M	S	T	Y	V	D	Y	I	I	N	Q	I	D	S	D	N	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	T	L	F	G	S	W	Q	L	R	E	D	Y	D	A	S	L	V	Y	H	K	F	W	R	V	D	D	D	S	D
Template Known Secondary structure											T	T	T													S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions