Job Description P02931 Confidence 100.00% Date Thu Jan 5 10:57:44 GMT 2012 Rank 4 Aligned Residues 333 % Identity 56% Template c3nsgA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein f; PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi Resolution 2.79 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	Y	N	K	D	G	N	K	V	D	L	Y	G	K	A	V	G	L	H	Y	F	S	K	G	N	G	E	N	S	Y	G	G	N	G	D	M	T	Y	A	R	L	G	F	K	G	E	T	Q	I	N	S	D	L	T	G	Y	G	Q	W	E	Y	N	F	Q	G	N	N	S	E	G	A	D	A	Q	T	G	N	K	T
Query Conservation
Alig confidence																																		.	.	.	.																																				.
Template Conservation																																		.	.	.	.																																				.
Template Sequence		E	I	Y	N	K	D	G	N	K	L	D	L	Y	G	K	A	V	G	R	H	V	W	T	T	T	G	D	S	K	N	A	D	.	.	.	.	Q	T	Y	A	Q	I	G	F	K	G	E	T	Q	I	N	T	D	L	T	G	F	G	Q	W	E	Y	R	T	K	A	D	R	A	E	G	.	E	Q	Q	N	S	N	L	V
Template Known Secondary structure							T	T																		S	T	T						.	.	.	.														S	S	S	S														S	S		T	T	.			S	T	T
Template Predicted Secondary structure																																		.	.	.	.																																				.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.					.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.				.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.																																							.
Query SS confidence																																								.	.	.																																							.
Query Sequence		R	L	A	F	A	G	L	K	Y	A	D	V	G	S	F	D	Y	G	R	N	Y	G	V	V	Y	D	A	L	G	Y	T	D	M	L	P	E	F	G	.	.	.	G	D	T	A	Y	S	D	D	F	F	V	G	R	V	G	G	V	A	T	Y	R	N	S	N	F	F	G	L	V	D	G	L	N	F	A	V	Q	Y	.
Query Conservation																																								.	.	.																																							.
Alig confidence																																								.	.	.																																							.
Template Conservation
Template Sequence		R	L	A	F	A	G	L	K	Y	A	E	V	G	S	I	D	Y	G	R	N	Y	G	I	V	Y	D	V	E	S	Y	T	D	X	A	P	Y	F	S	G	E	T	W	G	G	A	Y	T	D	N	Y	X	T	S	R	A	G	G	L	L	T	Y	R	N	S	D	F	F	G	L	V	D	G	L	S	F	G	I	Q	Y	Q
Template Known Secondary structure											T	T	T											T	T						T	T			S	S	S	S	S	S		S	T	T	T	S	S	S	S	S	T	T	S	S											S	S	S	S	S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	K	N	E	R	D	T	A	R	R	S	N	G	D	G	V	G	G	S	I	S	Y	E	Y	E	G	F	G	I	V	G	A	Y	G	A	A	D	R	T	N	L	Q	E	A	Q	P	L	G	N	G	K	K	A	E	Q	W	A	T	G	L	K	Y	D	A	N	N	I	Y	L	A	A	N	Y	G	E	T	R	N	A
Query Conservation
Alig confidence																																													.
Template Conservation																																													.
Template Sequence		G	K	N	Q	D	N	H	S	I	N	S	Q	N	G	D	G	V	G	Y	T	X	A	Y	E	F	D	G	F	G	V	T	A	A	Y	S	N	S	K	R	T	N	D	Q	.	Q	D	R	D	G	N	G	D	R	A	E	S	R	A	V	G	A	K	Y	D	A	N	N	V	Y	L	A	A	V	Y	A	E	T	R	N	X
Template Known Secondary structure				B		S	S	S		G	G	G		B		S											T	T														S	T	T	.	S	S	S	S	S			S														T	T											S	S
Template Predicted Secondary structure																																													.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.		.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		T	P	I	T	N	K	F	T	N	T	S	G	F	A	N	K	T	Q	D	V	L	L	V	A	Q	Y	Q	F	D	F	G	L	R	P	S	I	A	Y	T	K	S	K	A	K	D	.	V	E	G	I	G	D	V	D	L	V	N	Y	F	E	V	G	A	T	Y	Y	F	N	K	N	M	S	T	Y	V	D	Y	I	I	N
Query Conservation																																															.
Alig confidence																																															.
Template Conservation
Template Sequence		S	I	V	E	N	T	V	T	D	T	V	E	X	A	N	K	T	Q	N	L	E	V	V	A	Q	Y	Q	F	D	F	G	L	R	P	A	I	S	Y	V	Q	S	K	G	K	Q	L	N	G	A	G	G	S	A	D	L	A	K	Y	I	Q	A	G	A	T	Y	Y	F	N	K	N	X	N	V	W	V	D	Y	R	F	N
Template Known Secondary structure							T	T	T							S														T	T	S														S		T	T	T	T	S																		S	S
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		339	340	.	.	.	.	.	.	.	.	.			350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		Q	I	D	S	D	N	K	L	G	V	G	.	.	S	D	D	T	V	A	V	G	I	V	Y	Q	F
Query Conservation													.	.
Alig confidence													.	.
Template Conservation
Template Sequence		L	L	D	E	N	D	Y	S	S	S	Y	V	G	T	D	D	Q	A	A	V	G	I	T	Y	Q	F
Template Known Secondary structure							S	S		T	T	T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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