Job Description P02931 Confidence 98.20% Date Thu Jan 5 10:57:44 GMT 2012 Rank 21 Aligned Residues 304 % Identity 13% Template c2y0lA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:cis-aconitate porin opdh; PDBTitle: crystal structure of pseudomonas aeruginosa opdo Resolution 2.59 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	Y	G	K	A	V	G	L	H	Y	F	S	K	G	N	G	E	N	S	Y	G	G	N	G	D	M	T	Y	A	R	L	G	F	K	G	E	T	Q	I	N	S	D	L	T	G	Y	G	Q	W	E	Y	N	F	Q	G	N	N	S	E	G	A	D	A	Q	T	G	N	K	T	R	L	A	F	A	G	L	K	Y	A
Query Conservation
Alig confidence																								.	.	.	.	.	.	.																.	.	.
Template Conservation																								.	.	.	.	.	.	.																.	.	.
Template Sequence		K	A	S	L	E	T	R	N	F	Y	M	N	R	D	F	R	K	R	E	E	W	A	.	.	.	.	.	.	.	Q	G	F	I	L	N	L	Q	S	G	Y	T	Q	G	T	.	.	.	V	G	F	G	L	D	A	M	G	M	L	G	V	K	L	D	S	P	D	T	Y	S	K	L	G	L	T	A	K	V	K	V	S
Template Known Secondary structure																								.	.	.	.	.	.	.													S	S	S	.	.	.																																	T
Template Predicted Secondary structure																								.	.	.	.	.	.	.																.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40								.	.	.	.	.	.	.	.	.	50	.	.	.	.	.				.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		114	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence		D	V	G	S	F	D	Y	G	R	N	.	.	Y	G	V	V	Y	D	A	L	G	Y	T	D	M	L	P	E	F	G	G	D	T	A	Y	S	D	D	F	F	V	G	R	V	G	G	V	A	T	Y	R	N	S	N	F	F	G	L	V	D	G	L	N	F	A	V	Q	Y	L	G	K	N	E	R	D	T	A	R	R	S
Query Conservation												.	.
Alig confidence				.								.	.																																																.	.	.	.	.	.	.	.
Template Conservation				.																																																									.	.	.	.	.	.	.	.
Template Sequence		Q	S	.	E	L	K	V	G	T	L	I	P	K	L	P	S	V	Q	P	N	N	G	R	I	F	P	Q	I	F	E	G	A	L	L	T	S	K	E	I	K	D	L	G	F	T	A	G	R	L	E	K	T	K	I	D	S	E	D	L	.	.	.	.	.	.	.	.	A	L	N	D	K	N	G	R	F	A	G	V	S
Template Known Secondary structure		T		.											B	T	T	B					S	S	S	S													S	S	T	T																			.	.	.	.	.	.	.	.	B	B			G	G	G	S	S				B
Template Predicted Secondary structure				.																																																									.	.	.	.	.	.	.	.
Template SS confidence
		113	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170									.	.	.	.	.	.	.	.	.	180	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.																												.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure														.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	G	D	G	V	G	G	S	I	S	Y	E	.	Y	E	G	F	G	I	V	G	A	Y	G	A	A	D	R	T	N	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	Q	P	L	G	N	G	K	K	A	E	Q	W	A	T	G	L	K	Y	D
Query Conservation														.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	D	H	F	D	L	G	G	L	D	Y	K	L	T	D	Q	L	T	A	S	Y	H	Y	S	N	L	Q	D	V	Y	R	Q	H	F	V	G	L	L	H	S	W	P	I	G	P	G	E	L	T	S	D	L	R	F	A	R	S	T	D	S	G	S	A	K	A	G	G	I	D	N	K	S	L	N	G	M	F	T	Y	S
Template Known Secondary structure			S												S	S	S											T	T	T															S	S	S															T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.											.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.					.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Query Sequence		A	N	N	I	Y	L	A	A	N	Y	G	E	T	R	N	A	T	P	.	.	.	.	.	.	.	.	.	.	I	T	N	K	F	T	N	T	S	G	F	A	N	K	T	Q	D	V	L	L	V	A	Q	Y	Q	F	D	.	.	.	.	F	G	L	R	P	S	I	A	Y	T	K	S	K	A	K	D	V	E	G	I	G
Query Conservation																				.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Template Conservation
Template Sequence		L	G	N	H	A	F	G	A	A	W	Q	R	M	N	G	D	D	A	F	P	Y	L	E	G	S	N	P	Y	L	V	N	F	V	Q	V	N	D	F	A	G	P	K	E	R	S	W	Q	L	R	Y	D	Y	D	F	V	G	L	G	I	P	G	L	T	F	M	T	R	Y	V	K	G	D	N	V	E	L	A	G	Q	G
Template Known Secondary structure			T	T												S	S	S					B	T	T						T	T			S	S					S	T	T												G	G	G	G	T		T	T																S
Template Predicted Secondary structure
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.					.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure																			.	.	.	.
Query SS confidence																			.	.	.	.
Query Sequence		D	V	D	L	V	N	Y	F	E	V	G	A	T	Y	Y	F	N	.	.	.	.	K	N	M	S	T	Y	V	D	Y	I	I	N	Q	I	D	S	D	N	K	L	G	V	G	S	D	D	T	V	A	V	G	I	V	Y	Q	F
Query Conservation																			.	.	.	.
Alig confidence								.											.	.	.	.																.	.	.	.	.
Template Conservation								.																														.	.	.	.	.
Template Sequence		E	G	R	E	W	E	.	R	N	T	E	L	Q	Y	V	F	Q	S	G	A	L	K	N	L	G	I	R	W	R	N	A	T	F	R	S	N	.	.	.	.	.	F	T	R	D	I	D	E	N	R	L	I	V	S	Y	T	L
Template Known Secondary structure								.											S	S	T	T	T	T													S	.	.	.	.	.	S	S
Template Predicted Secondary structure								.																														.	.	.	.	.
Template SS confidence
		349	350	.	.	.	.		.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.						.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions