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Job DescriptionP02931
Confidence98.15%DateThu Jan 5 10:57:44 GMT 2012
Rank22Aligned Residues301
% Identity12%Templatec2y0kA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:pyroglutatmate porin opdo; PDBTitle: crystal structure of pseudomonas aeruginosa opdo
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   34.....40.........50.........60.........70.........80.........90.........100.........110...
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Query Sequence  DLYGKAVGLHYFSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYA
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Template Sequence  HASLELRNFYFNRDFRGARDNADEWA. . . QGFLLRLESGFSEGTVGFGVDAIGLLGFK. . . . LDQDDYAKLGLTAKARVS
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   7..10.........20.........30.. .......40.........50.........60. ........70.........
 
   114.....120.........130.........140.........150.........160.........170.........180......
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Query Sequence  DVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERD. . . . . . .
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Template Sequence  NS. LLKVGALHFKS. . . . . . . . . . . . . . PLVSANDTRLLPELFRGALLDVQEIDGLTLRGAHLDRNKLNSSSDYQVFSAN
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   102. ......110.... .....120.........130.........140.........150.........160......
 
   187..190.........200... ......210.........220.. .......230.........240.
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Query Sequence  TARRSNGDGVGGSISYE. YEGFGIVGAYGAADRTNLQ. . . . . . . . . . . . . . . . . . . . . . . . EAQPLGNGKKAEQWATGLK
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Template Sequence  RIGGRSDAFDFAGGDYRLTPALTASLHQGRLKDIYRQTFAGLVHTLDLGRSLKSDLRFARASEDGGFRELDNRAFGALFS
Template Known Secondary structure  TTS
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   167..170.........180.........190.........200.........210.........220.........230.........240......
 
   242.......250.........260.........270.... .....280......... 290.........300.......
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Query Sequence  YDANNIYLAANYGETRNATPITNKFTNTSGFAN. . . . . . . . . . KTQDVLLVAQYQFDF. . . . GLRPSIAYTKSKAKDVEG
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Template Sequence  LRLGAHAVAAGYQRISGDDPYPYIAGSDPYLVNFIQIGDFGNVDERSWQLRYDYDFGALGLPGLSFMSRYVSGDNVA. RG
Template Known Secondary structure  TTSSS



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   249250.........260.........270.........280.........290.........300.........310.........320..... ..
 
   308.310.........320...... ...330.........340.........350.........360..
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Query Sequence  IGDVDLVNYFEVGATYYFN. . . . KNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF
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Template Sequence  AANDGKEWERNTDLGYVVQSGPLKNLGVKWRNATVRSNFANDL. . . . . DENRLILSYSL
Template Known Secondary structure  T

SSTTTT
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   328.330.........340.........350.........360.........370 .........380.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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