Job Description P02931 Confidence 97.98% Date Thu Jan 5 10:57:44 GMT 2012 Rank 25 Aligned Residues 302 % Identity 12% Template c2qtkB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:probable porin; PDBTitle: crystal structure of the outer membrane protein opdk from2 pseudomonas aeruginosa Resolution 2.80 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.				.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure																																									.	.	.
Query SS confidence																																									.	.	.
Query Sequence		D	L	Y	G	K	A	V	G	L	H	Y	F	S	K	G	N	G	E	N	S	Y	G	G	N	G	D	M	T	Y	A	R	L	G	F	K	G	E	T	Q	.	.	.	I	N	S	D	L	T	G	Y	G	Q	W	E	Y	N	F	Q	G	N	N	S	E	G	A	D	A	Q	T	G	N	K	T	R	L	A	F	A	G	L
Query Conservation																																									.	.	.
Alig confidence																								.	.	.	.	.	.												.	.	.
Template Conservation																								.	.	.	.	.	.
Template Sequence		K	T	D	L	V	L	R	N	Y	Y	F	N	R	D	F	L	V	D	E	W	A	Q	.	.	.	.	.	.	G	F	I	L	K	F	S	S	G	Y	T	P	G	T	V	G	V	G	L	D	A	I	G	L	F	G	V	K	L	N	N	S	E	L	L	P	L	H	A	A	D	N	Y	G	R	V	G	V	A	A	K	L
Template Known Secondary structure																								.	.	.	.	.	.												S	S	S	S																		S	S	S						S
Template Predicted Secondary structure																								.	.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.							.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		K	Y	A	D	V	G	S	F	D	Y	G	R	N	Y	G	V	V	Y	D	A	L	G	Y	T	D	M	L	P	E	F	G	G	D	T	A	Y	S	D	D	F	F	V	G	R	V	G	G	V	A	T	Y	R	N	S	N	F	F	G	L	V	D	G	L	N	F	A	V	Q	Y	L	G	K	N	E	R	D	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence							.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.
Template Conservation							.												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	V	S	A	S	.	E	L	K	I	G	E	M	L	P	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	L	R	Y	D	D	G	R	L	L	P	Q	T	F	R	G	F	A	V	V	S	R	E	L	P	G	L	A	L	Q	A	G	R	F	D	A	V	S	L	R	N	S	A	D	M	Q	D	L
Template Known Secondary structure				S	S		.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T						S	S	S	S														S	T	T														T	T		S	S		B
Template Predicted Secondary structure							.												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		102	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.															.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
								187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.																												.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	T	A	R	R	S	N	G	D	G	V	G	G	S	I	S	Y	E	Y	E	G	F	G	I	V	G	A	Y	G	A	A	D	R	T	N	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	Q	P	L	G	N	G	K	K	A
Query Conservation		.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	A	W	S	A	P	T	Q	K	S	D	G	F	N	Y	A	G	A	E	Y	R	F	N	R	E	R	T	Q	L	G	L	W	H	G	Q	L	E	D	V	Y	R	Q	S	Y	A	N	L	L	H	K	Q	R	V	G	D	W	T	L	G	A	N	L	G	L	F	V	D	R	D	D	G	A	A	R	A	G	E	I	D	S
Template Known Secondary structure			B	T	T		T	T	S			S												T	T	T	T											T	T	T															T	T																T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.												.	.	.	.	.	280	.	.	.	.	.	.	.	.					.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Query Sequence		E	Q	W	A	T	G	L	K	Y	D	A	N	N	I	Y	L	A	A	N	Y	G	E	T	R	N	A	T	P	I	T	N	K	F	T	N	T	S	G	F	A	N	.	.	.	.	.	.	.	.	.	.	.	K	T	Q	D	V	L	L	V	A	Q	Y	Q	F	D	.	.	.	.	F	G	L	R	P	S	I	A	Y	T
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Conservation
Template Sequence		H	T	V	Y	G	L	F	S	A	G	I	G	L	H	T	F	Y	L	G	L	Q	K	V	G	G	D	S	G	W	Q	S	V	Y	G	S	S	G	R	S	M	G	N	D	M	F	N	G	N	F	T	N	A	D	E	R	S	W	Q	V	R	Y	D	Y	D	F	V	G	L	G	W	P	G	L	I	G	M	V	R	Y	G
Template Known Secondary structure													T	T													S	S					B	T	T			G	G	G	S	T	T		B	T	T	B				S	B	T												G	G	G	G	T		T	T
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.					.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure																														.	.	.	.
Query SS confidence																														.	.	.	.
Query Sequence		K	S	K	A	K	D	V	E	G	I	G	D	V	D	L	V	N	Y	F	E	V	G	A	T	Y	Y	F	N	.	.	.	.	K	N	M	S	T	Y	V	D	Y	I	I	N	Q	I	D	S	D	N	K	L	G	V	G	S	D	D	T	V	A	V	G	I	V	Y	Q	F
Query Conservation																														.	.	.	.
Alig confidence								.																						.	.	.	.																					.	.	.	.	.
Template Conservation								.																																														.	.	.	.	.
Template Sequence		H	G	S	N	A	T	.	T	K	A	G	S	G	G	K	E	W	E	R	D	V	E	L	G	Y	T	V	Q	S	G	P	L	A	R	L	N	V	R	L	N	H	A	S	N	R	R	S	F	N	S	D	F	.	.	.	.	.	D	Q	T	R	L	V	V	S	Y	P	L
Template Known Secondary structure							B	.		S	S		S																	S	S	S	S	T	T													S	S	S				.	.	.	.	.
Template Predicted Secondary structure								.																																														.	.	.	.	.
Template SS confidence
		327	.	.	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.						.	.	380	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions