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Job DescriptionP02931
Confidence98.30%DateThu Jan 5 10:57:44 GMT 2012
Rank18Aligned Residues310
% Identity13%Templatec2odjA_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:porin d; PDBTitle: crystal structure of the outer membrane protein oprd from pseudomonas2 aeruginosa
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   14.....20.........30.........40.........50.........60.........70..... ....80.........90
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Query Sequence  LLVAGTANAAEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYARLGFKGETQINS. . . DLTGYGQWEYNFQGN
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Template Sequence  XFVSDQAEAKGFIEDS. . . . SLDLLLRNYYFNRDGKRVDWTQ. . . . . . GFLTTYESGFTQGTVGFGVDAFGYLGLK. . . .
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   2.......10....... ..20.........30......... 40.........50.........60.......
 
   91........100.........110.........120.........130.........140.........150.........160.........170
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Query Sequence  NSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLV
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Template Sequence  . . . . . LDGTDYSRAGGAVKVRISKT. XLKWGEX. . . . . . . . . . . . . . . . . . QPTAPVFAAGGSRLFPQTATGFQLQSSEF
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   73......80.........90.. ....... 100.........110.........120........
 
   171........180.... .....190.........200... ......210.........220..
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Query Sequence  DGLNFAVQYLGKNE. RDTARRSNGDGVGGSISYE. YEGFGIVGAYGAADRTNLQ. . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  EGLDLEAGHFTEELYATYAGETAKSADFIGGRYAITDNLSASLYGAELEDIYRQYYLNSNYTIPLASDQSLGFDFNIYRT
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   148.150.........160.........170.........180.........190.........200.........210.........220.......
 
   223......230.........240.........250.........260.........270 .........280.......
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Query Sequence  . . EAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTS. . . . . . . . . . GFANKTQDVLLVAQYQF. . .
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Template Sequence  NDEGKAKAGDISNTTWSLAAAYTLDAHTFTLAYQKVHGDQPFDYIGFGSIFLANSVQYSDFNGPGEKSWQARYDLNLASY
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   239240.........250.........260.........270.........280.........290.........300.........310........
 
   288.290.........300.... .....310.........320...... ...330.........340.........350
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Query Sequence  . DFGLRPSIAYTKSKAKD. . . . . . . . . . . . VEGIGDVDLVNYFEVGATYYFN. . . . KNMSTYVDYIINQIDSDNKLGVGS
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Template Sequence  GVPGLTFXVRYINGKDIDGTKXSDNNVGYKNYGYGEDGKHHETNLEAKYVVQSGPAKDLSFRIRQAWHRANADQGEGDQN
Template Known Secondary structure  S
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   328.330.........340.........350.........360.........370.........380.........390.........400.......
 
   351........360.
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Query Sequence  DDTVAVGIVYQ
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Template Sequence  EFRLIVDYPLS
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   408.410........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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