Job Description P02931 Confidence 99.92% Date Thu Jan 5 10:57:44 GMT 2012 Rank 9 Aligned Residues 320 % Identity 14% Template c2o4vA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:porin p; PDBTitle: an arginine ladder in oprp mediates phosphate specific transfer across2 the outer membrane Resolution 1.94 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	K	D	G	N	K	V	D	L	Y	G	K	A	V	G	L	H	Y	F	S	K	G	N	G	E	N	S	Y	G	G	N	G	D	M	T	Y	A	R	L	G	F	K	G	E	T	Q	I	N	S	D	L	T	G	Y	G	Q	W	E	Y	N	F	Q	G	N	N	S	E	G	A	D	A	Q	T	G	N	K	T	R	L	A
Query Conservation
Alig confidence																																																														.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.
Template Sequence		T	D	K	E	F	S	F	K	L	G	G	R	L	Q	A	D	Y	G	R	F	D	G	Y	Y	T	N	N	G	N	T	A	D	A	A	Y	F	R	R	A	Y	L	E	F	G	G	T	A	Y	R	D	W	K	Y	Q	I	N	Y	D	L	S	.	.	.	.	.	.	R	N	V	G	N	D	S	A	G	Y	F	D	E	A
Template Known Secondary structure		T	T	S	S																			T	T	B	S	S	S	S																			T	T	T									T	T	.	.	.	.	.	.			S	S	B	T	T	T	B
Template Predicted Secondary structure																																																														.	.	.	.	.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.							.	.	.	.	.	.	.	90	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	G	L	K	Y	A	D	V	G	S	F	D	Y	G	R	N	Y	G	V	V	Y	D	A	L	G	Y	T	D	M	L	P	E	F	G	G	D	T	A	Y	S	D	D	F	F	V	G	R	V	G	G	V	A	T	Y	R	N	S	N	F	F	G	L	V	D	G	L	N	F	A	V	Q	Y	L	G	K	N	E	R	D
Query Conservation
Alig confidence																																																													.	.	.
Template Conservation																																																													.	.	.
Template Sequence		S	V	T	Y	T	G	F	N	P	V	N	L	K	F	G	R	F	Y	T	D	F	G	L	E	K	A	T	S	S	K	W	V	T	A	L	E	R	N	L	T	Y	D	I	A	D	W	V	N	D	N	V	G	T	G	I	Q	A	S	S	.	.	.	V	V	G	G	M	A	F	L	S	G	S	V	F	S	E	N	N	N
Template Known Secondary structure							T	T	T	T	S																	S		T	T	T		S	S	S	S			G	G	G	G	G	S	G	G	G	G			S									.	.	.			T	T	T
Template Predicted Secondary structure																																																													.	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.				.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.						.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220																																		.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	A	R	R	S	N	G	D	G	V	G	G	S	I	S	Y	E	.	.	.	.	.	Y	E	G	F	G	I	V	G	A	Y	G	A	A	D	R	T	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Q	E	A	Q	P	L	G
Query Conservation																			.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	T	D	G	D	S	V	K	R	Y	N	L	R	G	V	F	A	P	L	H	E	P	G	N	V	V	H	L	G	L	Q	Y	A	Y	R	D	L	E	D	S	A	V	D	T	R	I	R	P	R	M	G	M	R	G	V	S	T	N	G	G	N	D	A	G	S	N	G	N	R	G	L	F	G	G	S	S	A	V	E	G
Template Known Secondary structure		B	T	T	S																		T	T															T	T	B						B				T	T		G	G	G	S		S	S	B				G	G	G	B						B						T	T
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	G	K	K	A	E	Q	W	A	T	G	L	K	Y	D	A	N	N	I	Y	L	A	A	N	Y	G	E	T	R	N	A	T	P	I	T	N	K	F	T	N	T	S	G	F	A	N	K	T	Q	D	V	L	L	V	A	Q	Y	Q	F	D	F	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.
Template Sequence		L	W	K	D	D	S	V	W	G	L	E	G	A	W	A	L	G	A	F	S	A	Q	A	E	Y	L	R	R	T	V	K	.	.	.	.	.	.	.	A	E	R	D	R	E	D	L	K	A	S	G	Y	Y	A	Q	L	A	Y	T	L	T	G	E	P	R	L	Y	K	L	D	G	A	K	F	D	T	I	K	P	E	N
Template Known Secondary structure		S																T	T														.	.	.	.	.	.	.			T	T																	T	T								T	T	T	T								S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.								.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
							291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.								.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.		.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																		.	.	.	.	.	.	.																																							.
Query SS confidence		.	.	.	.	.																		.	.	.	.	.	.	.																																							.
Query Sequence		.	.	.	.	.	L	R	P	S	I	A	Y	T	K	S	K	A	K	D	V	E	G	.	.	.	.	.	.	.	I	G	D	V	D	L	V	N	Y	F	E	V	G	A	T	Y	Y	F	N	K	N	M	S	T	Y	V	D	Y	I	I	N	Q	I	D	S	D	N	K	.	L	G	V	G	S	D	D	T	V	A	V	G
Query Conservation		.	.	.	.	.																		.	.	.	.	.	.	.																																							.
Alig confidence		.	.	.	.	.																		.	.	.	.	.	.	.																																							.
Template Conservation
Template Sequence		K	E	I	G	A	W	E	L	F	Y	R	Y	D	S	I	K	V	E	D	D	N	I	V	V	D	S	A	T	R	E	V	G	D	A	K	G	K	T	H	T	L	G	V	N	W	Y	A	N	E	A	V	K	V	S	A	N	Y	V	K	A	K	T	D	K	I	S	N	A	N	G	D	D	S	G	D	G	L	V	M	R
Template Known Secondary structure		T	T	T																	T	T			S			S	S	B		S	S																S	S	S														S	B			T	T
Template Predicted Secondary structure
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
		358	.	360	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	Y	Q	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Q	Y	V	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		407	.	.	410	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions