 |
Job Description | P0AC69 | Confidence | 76.38% | Date | Thu Jan 5 11:17:25 GMT 2012 |
Rank | 316 | Aligned Residues | 61 |
% Identity | 10% | Template | c3hdcA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:thioredoxin family protein; |
PDBTitle: the crystal structure of thioredoxin protein from geobacter2 metallireducens
|
Resolution | 1.77 Å |
|
 |
  |   |
12 | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | |
|
|
|
|
. | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
60 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | A | E | N | P | I | L | L | Y | M | K | G | S | P | K | L | P | S | C | G | F | S | A | Q | A | V | Q | A | L | A | A | C | . |
. |
. |
. |
. |
G | E | R | F | A | Y | V | D | I | L | Q | N | P | D | I | R | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
A | E | L | P | K | Y | A | N | W | P |
Query Conservation |   |
|   |   |   |   |
|
|
|
|   |
|
|   |   |   |   |
|   |
|
|   |
|   |   |   |
|   |   |
|   |   |   | . | . | . | . | . |   |
|   |   |   |   |   |
|
|   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |
|   |   |   |
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|   |
|
|
|   |
|   |   |   | . | . | . | . |   |
|   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
Y | R | G | K | I | V | L | V | N | F | W | A | S | . |
. |
. |
. |
W | C | P | Y | C | R | D | E | X | P | S | X | D | R | L | V | K | S | F | P | K | G | D | L | V | V | L | A | V | N | V | E | K | R | F | P | E | K | Y | R | R | A | P | V | S | F | N | F | L | S | D | A | T | G | Q | V | Q | Q | R | Y | G | A | N |
Template Known Secondary structure |   |
G | T | T | S |  |  |  |  |  |  |  |
| T | . | . | . | . | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S | S | T | T | S |  |  |  |  |  |  |  |
| S | S | S |
|
| G | G | G | G | G |
|
|
| S |
|  |  |  |  |
| T | T | S |  |  |  |  |  | T | T |
|
|
Template Predicted Secondary structure |   |
 |
|
|
|  |  |  |  |  |
|
|
|
| . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
57 | . | . | 60 | . | . | . | . | . | . | . | . | . | |
|
|
|
70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . |
  |
  |   |
70 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
Query Sequence |   |
T | F | P | Q | L | W | V |
Query Conservation |   |
|
|
|   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |
|
Template Sequence |   |
R | L | P | D | T | F | I |
Template Known Secondary structure |   |
S | S | S |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
  |   |
133 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|