 |
Job Description | P0A9N0 | Confidence | 4.53% | Date | Thu Jan 5 11:10:46 GMT 2012 |
Rank | 86 | Aligned Residues | 70 |
% Identity | 16% | Template | c1bvuF_ |
PDB info |
PDB header:oxidoreductase | Chain: F: PDB Molecule:protein (glutamate dehydrogenase); |
PDBTitle: glutamate dehydrogenase from thermococcus litoralis
|
Resolution | 2.50 Å |
|
 |
  |   |
8 | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |
|  |  |
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | I | T | N | K | L | G | M | H | A | R | P | A | M | K | L | F | E | L | M | Q | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
F | D | A | E | V | L | L | R | N | D | E | G | T | E | A | E | A | N | S | V | I | A | L | L | M | L | D | S | A | K | G | R | Q | I | E | V | E | A | T | G | P |
Query Conservation |   |
  |
|   |
|   |   |
|
|
|
|
|
|
|
|   |
|
|   |   |
|   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |
|   |
|   |
|   |   |   |   |
|   |   |   |   |
|
|
|
|
|   |
|
|   |
|   |   |   |   |
|   |   |
|   |
|   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |
|
|   |
|
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|   |   |   |   |
|
|
|
|
|
|
|   |   |   |   |
|   |   |   |
|
|   |   |
| . | . | . | . | . | . | . | . | . |   |
|
|   |
|
|
|
|
|
Template Sequence |   |
G | I | Y | N | P | D | G | L | N | A | D | E | V | L | A | W | K | K | K | T | G | S | V | K | D | F | P | G | A | T | N | I | T | N | E | E | L | L | E | L | E | V | D | V | L | A | P | S | A | I | E | E | V | I | T | K | K | N | A | D | N | I | . |
. |
. |
. |
. |
. |
. |
. |
. |
K | A | K | I | V | A | E | L | A |
Template Known Secondary structure |   |
 |  |  |
| T | T |
|
|
|  |  |  |  |  |  |  |  |  |  |  | S | S | S | T | T |
| T | T | S |  |  |  |
|  |  |  |  |  | T | S |
|
| S |  |  |  |  |
| S |
| S | S |
| B |
|  |  |  |  | T | T |
| . | . | . | . | . | . | . | . | . |
|
| S |  |  |  |
|
| S |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |
| . | . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
247 | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
. | 310 | . | . | . | . | . | . | . |
  |
  |   |
71 | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | E | E | E | A | L | A | A | V | I | A | L | F | N | S | G |
Query Conservation |   |
|
|   |   |
|   |   |   |
|   |   |
|   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|   |
|
|   |   |   |
|   |   |
|
|
Template Sequence |   |
N | G | P | T | T | P | E | A | D | E | I | L | Y | E | K | G |
Template Known Secondary structure |   |
S |
|
| B |
|  |  |  |  |  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
318 | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|