|   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | |
|
. | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | |
|
|
|
. | . | . | . | . | . | . | . | |
|
. | 50 | . | . | . | |
|
|
. | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . |
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |
|
|
| . | . |  |  |  |  |  | . | . | . |
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | T | E | A | Q | R | H | Q | I | L | L | E | M | L | A | Q | L | G | . |
. |
F | V | T | V | E | K | V | V | E | R | L | G | I | S | P | A | T | A | R | R | D | I | . |
. |
. |
. |
N | K | L | D | E | S | G | K | . |
. |
L | K | K | V | R | . |
. |
. |
N | G | A | E | A | I | T | Q | Q | R | P | R | W | T | P | M |
Query Conservation |   |
|   |   |   |
|
|   |   |   |
|
|   |   |
|   |   |   |
| . | . |   |
|   |
|   |
|
|
|
|   |   |   |
|
|   |   |
|
|
|
|
|
| . | . | . | . |   |   |
|
|   |   |
|   | . | . |
|   |
|   |   | . | . | . |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
| . | . |
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
Template Conservation |   |
  |   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|
|
|
|   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |
|
|
|   |   |   |
|   |   |   |   | . | . | . | . | . |
Template Sequence |   |
F | R | R | S | G | R | L | V | D | L | T | N | Y | L | L | T | H | P | H | E | L | I | P | L | T | F | F | S | E | R | Y | E | S | A | K | S | S | I | S | E | D | L | T | I | I | K | Q | T | F | E | Q | Q | G | I | G | T | L | L | T | V | P | G | A | A | G | G | V | K | Y | I | P | K | M | K | Q | . |
. |
. |
. |
. |
Template Known Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | S | T | T |
|
| B |
|  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S |  |  |  |  |  |  |
| S | T | T |
|  |  |  |  |  |  |
|
|
|  | . | . | . | . | . |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
| . | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | |
|
|
|
|
  |
  |   |
70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | |
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | |
|
|
|
. | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
| . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |
|
|
|
|
| . | . | . | . |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | L | H | Q | A | Q | N | H | D | E | K | V | R | I | A | K | A | A | S | Q | L | V | N | P | G | E | S | V | V | I | N | C | . |
. |
. |
. |
. |
. |
. |
. |
G | S | T | A | F | L | L | G | R | E | M | C | G | K | P | . |
. |
. |
. |
V | Q | I | I | T | N | Y | L | P | L | A | N | Y | L | I | D | Q | E | H | D | S |
Query Conservation |   |
  |   |
|   |   |   |   |   |   |   |
|   |   |
|
|   |   |
|   |   |   |
|   |   |   |   |   |
|
|
|
|   | . | . | . | . | . | . | . | . |
|
|
|   |   |   |
|
|   |   |
|   |   |   |   | . | . | . | . |
|
|
|
|
|
|
|
|   |
|
|   |   |
|   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   | . | . |   |   |
|
|
|
|
|   |   |
|
|   |   |   |
|
|   |
|
|   |   |
|   |   |
|
|   |   |
|
|   |   |   |   |   |   |   |
|
|
|
|
|   |
|
|   |   |
|
|
|
|
|   |   |
|
|   |   |
|
|   |
|
Template Sequence |   |
A | E | A | E | E | F | V | Q | T | L | G | Q | S | L | A | N | . |
. |
P | E | R | I | L | P | G | G | Y | V | Y | L | T | D | I | L | G | K | P | S | V | L | S | K | V | G | K | L | F | A | S | V | F | A | E | R | E | I | D | V | V | M | T | V | A | T | K | G | I | P | L | A | Y | A | A | A | S | Y | L | N | V | P |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
| . | . | G | G | G |  |  | T | T | T |  |  |
|
| T | T | T | T | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T | S |
|
| S |  |  |  |  |  | T | T | T | T |  |  |  |  |  |  |  |  |  |  |  | T |
|
|
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
78 | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | |
|
. | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . |
  |
  |   |
138 | . | 140 | . |
Predicted Secondary structure |   |
 |  |  |  |
Query SS confidence |   |
|
|
|
|
Query Sequence |   |
V | I | I | M |
Query Conservation |   |
|   |
|   |
Alig confidence |   |
|
|
|
|
Template Conservation |   |
|
|   |
|
Template Sequence |   |
V | V | I | V |
Template Known Secondary structure |   |
 |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
Template SS confidence |   |
|
|
|
|
  |   |
156 | . | . | . |
  |