Return to main results Retrieve Phyre Job Id

Job DescriptionQ9JMT8
Confidence98.21%DateThu Jan 5 12:38:13 GMT 2012
Rank16Aligned Residues89
% Identity11%Templated1w25a3
SCOP infoFerredoxin-like Nucleotide cyclase GGDEF domain
Resolution2.70

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10......... 20.........30.........40.........50......... 60.......
Predicted Secondary structure 





..............





.



Query SS confidence 
















. . . . . . . . . . . . . .







































.







Query Sequence  TIKIKLNLIDYDSIVNI. . . . . . . . . . . . . . EFPCLLSEIEIELLSQLLKGYSVNEISKRRNRSIKTVSCQ. KMKLYKKL
Query Conservation             
     ..............

   
 
     
                  



    .       
Alig confidence 
















..............







































.







Template Conservation     
           
     
                      
                  




           
Template Sequence  ALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGREMLNVTISIGVSATAGEGDTPEAL
Template Known Secondary structure  TS
TTS
SSSTT

TS

GGGS





STT

Template Predicted Secondary structure 








































Template SS confidence 















































































   351........360.........370.........380.........390.........400.........410.........420.........430
 
   68.70.........80.........90.
Predicted Secondary structure 






Query SS confidence 























Query Sequence  NVKSDLTLWRDVFLRFKAYLQPKN
Query Conservation 
  

 

  
             
Alig confidence 























Template Conservation 
  
  

  

  
 
 
     
Template Sequence  LKRADEGVYQAKASGRNAVVGKAA
Template Known Secondary structure  TTSS



Template Predicted Secondary structure 




Template SS confidence 























   431........440.........450....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions