 |
Job Description | Q9JMT8 | Confidence | 28.76% | Date | Thu Jan 5 12:38:13 GMT 2012 |
Rank | 316 | Aligned Residues | 127 |
% Identity | 8% | Template | c3t9pB_ |
PDB info |
PDB header:isomerase | Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family |
PDBTitle: crystal structure of a putative mandelate racemase/muconate2 lactonizing enzyme family protein from roseovarius
|
Resolution | 1.97 Å |
|
 |
  |   |
169 | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
H | I | N | K | L | F | S | P | I | K | N | N | L | P | H | G | F | F | I | T | I | N | I | N | P | E | D | I | L | T | C | D | I | E | R | E | C | L | H | F | I | K | V | F | G | T | E | R | I | R | L | V | L | Q | F | S | T | K | E | E | L | Y | I | I | R | R | Y | Q | S | S | L | R | R | I | R | N | N | N | V | Y |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|   |   |   |
|   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |
|   |   |
|
|   |   |   |
|   |   |   |   |
|   |
|
|
|
|   |   |   | . | . |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   | . | . | . | . | . | . | . |
|   |   |
|
|
|
|   |   |   |   |
|   |   |   |   |   |   |
|   |   | . | . |   |   |   |   |
|
Template Sequence |   |
R | T | E | A | V | V | P | T | V | S | R | A | L | G | D | G | I | E | K | L | V | D | G | N | S | C | Y | . |
. |
S | P | A | R | A | I | E | V | G | K | L | L | Q | D | N | G | . |
. |
. |
. |
. |
. |
. |
I | G | H | F | E | E | P | C | P | Y | W | E | Y | D | Q | T | A | A | V | R | A | . |
. |
A | L | L | L | D |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
| T | T |
|  |  |  |  |  |
| T | T |
|
| . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | . | . | . | . | . | . | . |
|
|  |  |  |
|
| S |
| T | T |
|  |  |  |  |  |  |  |  |  | . | . |  |
| S | S |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
| . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . | . | . | . | . | . |
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  | . | . |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
184 | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | |
|
. | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | |
|
|
|
|
|
|
. | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | |
|
. | . | 250 | . | . |
  |
  |   |
249 | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | |
. | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
| . |
|
|  |  |  |  |
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | S | L | N | D | F | G | M | G | Y | A | E | L | S | H | L | Q | N | I | P | . |
F | S | Y | V | N | L | H | K | T | M | F | H | D | I | E | S | N | S | L | T | D | I | I | A | T | T | I | I | D | L | S | K | Q | L | H | I | D | V | I | A | D | G | I | E | T |
Query Conservation |   |
|   |
|
|
|
|
|   |
|   |   |
|
|   |   |
|   |   |
|   | . |   |
|   |
|
|
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|
|   |   |
|   |
|   |
|
|
|   |
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|
|
|   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |
|   |
|   |   |
|   |   |   |   |
|
|
|
|   |   |   |   | . | . | . | . | . | . | . |
|   |   |   |
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |
Template Sequence |   |
V | A | G | G | E | Q | D | C | E | Y | S | S | W | Q | L | M | L | D | R | G | A | V | D | I | V | Q | P | D | V | M | Y | M | G | G | M | H | R | T | L | Q | . |
. |
. |
. |
. |
. |
. |
V | C | Q | M | A | A | R | A | G | L | P | V | T | P | H | A | A | N | L |
Template Known Secondary structure |   |
 |  |  |
| T | T |
|
| S |  |  |  |  |  |  |  |  |  | T | T |
|
| S |  |  |
|
|
|  |  |  |  | T | S |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  | T | T |
|
| B |
|
|
|
|
| S | S |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
253 | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | |
|
|
|
|
|
|
. | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|