Job Description Q9JMT8 Confidence 100.00% Date Thu Jan 5 12:38:13 GMT 2012 Rank 1 Aligned Residues 329 % Identity 12% Template c3pjwA_ PDB info PDB header:lyase Chain: A: PDB Molecule:cyclic dimeric gmp binding protein; PDBTitle: structure of pseudomonas fluorescence lapd ggdef-eal dual domain, i23 Resolution 3.10 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	I	K	I	K	L	N	L	I	D	Y	D	S	I	V	N	I	E	F	P	C	L	L	S	E	I	E	I	E	L	L	S	Q	L	L	K	G	Y	S	V	N	E	I	S	K	R	R	N	R	S	I	K	T	V	S	C	Q	K	M	K	L	Y	K	K	L	N	V	K	S	D	L	T	L	W	R	D	V	F	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	N	L	V	T	R	I	R	G	G	E	F	A	V	L	A	P	G	M	T	R	E	E	A	L	Q	L	A	Q	S	L	D	S	A	L	S	S	L	Y	A	T	G	A	T	D	V	A	A	V	A	S	I	G	L	A	P	F	A	H	G	D	S	P	Q	A	V	L	S	L	G	D	Q	A	L	A	Q	A	E	G	Q
Template Known Secondary structure		T	T							T	T								T																		T						T	S		S		T	T											T	T																			S
Template Predicted Secondary structure
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		R	F	K	A	Y	L	Q	P	K	N	I	I	C	D	N	F	N	S	S	V	L	P	V	V	S	S	K	G	E	S	M	A	H	Y	N	I	Y	Y	Q	P	I	Y	N	A	K	N	G	N	.	I	A	G	C	D	V	T	I	A	L	K	N	S	D	G	S	A	F	A	L	D	S	D	R	I	N	Y	N	P	N	D
Query Conservation																																																		.
Alig confidence																	.	.	.	.	.																													.																	.
Template Conservation																	.	.	.	.	.																																														.
Template Sequence		G	E	Q	N	W	A	C	L	D	G	D	D	H	H	A	.	.	.	.	.	W	H	R	L	L	D	Q	A	L	N	Q	R	R	F	E	L	F	F	Q	P	V	V	A	A	Q	D	T	Q	L	V	L	H	Y	K	V	L	S	R	L	L	D	E	Q	G	Q	.	T	I	P	A	G	R	F	L	P	W	L	E	R	F
Template Known Secondary structure		S	S		S								S				.	.	.	.	.											T	T												S	S		T	T														T	T	S		.													T	T
Template Predicted Secondary structure																	.	.	.	.	.																																														.
Template SS confidence
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.						.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450		.	.	.	.	.	.	.	.	.	460	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		N	K	V	S	Y	L	F	G	H	I	N	K	L	F	S	P	I	K	N	N	L	P	H	G	F	F	I	T	I	N	I	N	P	E	D	I	L	T	C	D	I	E	R	E	C	L	H	F	I	K	V	F	G	T	E	R	I	R	L	V	L	Q	F	S	T	K	E	E	L	Y	I	I	R	R	Y	Q	S	S	L	R
Query Conservation
Alig confidence																										.	.																																														.
Template Conservation																										.	.																																														.
Template Sequence		G	W	T	A	R	L	D	R	L	M	L	E	R	V	L	E	Q	M	A	G	H	E	E	S	.	.	L	A	L	N	L	S	S	A	T	L	A	D	P	Q	A	L	N	K	V	F	E	I	L	R	A	H	S	N	L	G	A	R	L	T	L	E	I	G	E	E	Q	L	P	E	Q	.	A	V	L	E	Q	L	T	R
Template Known Secondary structure		T																	G	G	G					.	.												S	S													T	G	G	G	T	T	T							G	G	G					.
Template Predicted Secondary structure																										.	.																																														.
Template SS confidence
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.			.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540		.	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	R	N	N	N	V	Y	L	S	L	N	D	F	G	M	G	Y	A	E	L	S	H	L	Q	N	I	P	F	S	Y	V	N	L	H	K	T	M	F	H	D	I	E	S	N	S	L	T	D	I	I	A	T	T	I	I	D	L	S	K	Q	L	H	I	D	V	I	A	D	G	I	E	T	K	K	Q	A	G	Y	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	R	E	L	G	F	S	L	S	L	Q	R	F	G	G	R	F	S	M	I	G	N	L	A	R	L	G	L	A	Y	L	K	I	D	G	S	Y	I	R	A	I	D	Q	E	S	D	K	R	L	F	I	E	A	I	Q	R	A	A	H	S	I	D	L	P	L	I	A	E	R	V	E	T	E	G	E	L	S	V	I
Template Known Secondary structure						T	T										S		G	G	G	T	S	S							S						T	T	T	T	T	T	T	T	T																	T	T	T										S
Template Predicted Secondary structure
Template SS confidence
		549	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	R	G	V	K	Y	L	K	G	I	A	L	S	S	P	L	P	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	E	M	G	L	Y	G	V	Q	G	Q	L	F	G	E	P	K	P	W
Template Known Secondary structure			T	T	T		S				S	G	G	G				B
Template Predicted Secondary structure
Template SS confidence
		629	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions