 |
Job Description | Q9JMT8 | Confidence | 38.87% | Date | Thu Jan 5 12:38:13 GMT 2012 |
Rank | 280 | Aligned Residues | 84 |
% Identity | 13% | Template | c3o6cA_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:pyridoxine 5'-phosphate synthase; |
PDBTitle: pyridoxal phosphate biosynthetic protein pdxj from campylobacter2 jejuni
|
Resolution | 1.87 Å |
|
 |
  |   |
224 | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|  |  |  |  |  |
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Sequence |   |
S | T | K | E | E | L | Y | I | I | R | R | Y | Q | S | S | L | R | R | I | R | N | N | N | V | Y | L | S | L | N | D | F | G | M | G | Y | A | E | L | S | H | L | Q | N | I | P | F | S | Y | V | N | L | H | K | T | M | F | H | D | I | E | S | N | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Conservation |   |
  |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |
|   |
|
|
|
|
|   |
|   |   |
|
|   |   |
|   |   |
|   |   |
|   |
|
|
|
|   |   |   |
|   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
|
|
|
|
|
|   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |   |
|
|
|
|
|
|
| . |
|
|
|   |   |
|   |
|   |   |
|   |   |   |
|
|
|   |
|
|
|
|
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |
Template Sequence |   |
T | E | G | G | L | C | L | N | H | A | K | L | K | Q | S | I | E | K | L | Q | N | A | N | I | E | V | S | L | F | . |
I | N | P | S | L | E | D | I | E | K | S | K | I | L | K | A | Q | F | I | E | L | H | T | G | H | Y | A | N | L | H | N | A | L | F | S | N | I | S | H | T | A | F | A | L | K | E | L | D | Q | D |
Template Known Secondary structure |   |
T | T | S | S | B |
| T | T |
| T | T |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  | . |  |
| S |
|  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  | S | S | G | G | G | S | T | T |
|
| G | G | G |
| S |
|
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  | . |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
99 | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | |
. | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . |
  |
  |   |
|
|
|
|
|
|
|
|
286 | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
. | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
Query SS confidence |   |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
S | L | T | D | I | I | A | T | T | I | I | D | L | S | K | Q | L | H | I | D | V | I | A |
Query Conservation |   |
. | . | . | . | . | . | . | . |   |   |   |   |   |   |
|   |   |
|   |   |
|
|   |   |
|   |
|   |
|
|
|
Alig confidence |   |
. | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|
|   |   |
|   |   |
|
|   |   |
|   |   |
|
|
|   |
|
|
|
Template Sequence |   |
K | K | T | L | Q | A | Q | F | E | K | E | L | Q | N | L | E | L | C | A | K | K | G | L | E | L | G | L | K | V | A | A |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
178 | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|