Job Description Q9JMT8 Confidence 88.19% Date Thu Jan 5 12:38:13 GMT 2012 Rank 88 Aligned Residues 111 % Identity 11% Template c3dzdA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state Resolution 2.40 Å

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		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	I	I	R	R	Y	Q	S	S	L	R	R	I	R	N	N	N	V	Y	L	S	L	N	D	F	G	M	G	Y	A	E	L	S	H	L	Q	N	I	P	F	S	Y	V	N	L	H	K	T	M	F	H	D	I	E	S	N	S	L	T	D	I	I	A	T	T	I	I	D	L	S	K	Q	L	H	I	D	V	I	A	D
Query Conservation
Alig confidence																					.	.																												.	.	.	.	.																							.
Template Conservation																					.	.																												.	.	.	.	.																							.
Template Sequence		D	E	E	S	I	T	S	S	L	S	A	I	L	E	E	E	G	Y	H	.	.	P	D	T	A	K	T	L	R	E	A	E	K	K	I	K	E	L	F	F	P	V	I	V	L	D	V	W	.	.	.	.	.	X	P	D	G	D	G	V	N	F	I	D	F	I	K	E	N	S	P	D	S	V	V	.	I	V	I	T
Template Known Secondary structure		S															T	T			.	.					S	S											S			S						S		.	.	.	.	.		T	T			T	T	T										T	T				.
Template Predicted Secondary structure																					.	.																												.	.	.	.	.																							.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.						.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.	.	80
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	E	T	K	K	Q	A	G	Y	M	I	E	R	G	V	K	Y	L	K	G	I	A	L	S	S	P	L	P	A	D	A	F	V	R	K	L	L	A	S	L	K	Q
Query Conservation
Alig confidence																				.	.	.	.
Template Conservation																				.	.	.	.
Template Sequence		G	H	G	S	V	D	T	A	V	K	A	I	K	K	G	A	Y	E	.	.	.	.	F	L	E	K	P	F	S	V	E	R	F	L	L	T	I	K	H	A	F	E	E
Template Known Secondary structure			S	S												T				.	.	.	.				S	S
Template Predicted Secondary structure																				.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.					.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions