 |
Job Description | Q9JMT8 | Confidence | 27.94% | Date | Thu Jan 5 12:38:13 GMT 2012 |
Rank | 319 | Aligned Residues | 122 |
% Identity | 11% | Template | c3cyjA_ |
PDB info |
PDB header:isomerase | Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme-like |
PDBTitle: crystal structure of a mandelate racemase/muconate lactonizing enzyme-2 like protein from rubrobacter xylanophilus
|
Resolution | 2.30 Å |
|
 |
  |   |
171 | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | K | L | F | S | P | I | K | N | N | L | P | H | G | F | F | I | T | I | N | I | N | P | E | D | I | L | T | C | D | I | E | R | E | C | L | H | F | I | K | V | F | G | T | E | R | I | R | L | V | L | Q | F | S | T | K | E | E | L | Y | I | I | R | R | Y | Q | S | S | L | R | R | I | R | N | N | N | V | Y | L | S |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|   |   |   |
|   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |
|
|   |   |   |
|   |   |   |   |
|   |   |
|
|
| . |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   | . | . | . | . | . | . | . |
|   |   |
|
|
|
|   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|
|
|
Template Sequence |   |
P | E | R | V | R | A | A | R | E | A | I | G | E | S | V | E | L | M | V | D | A | N | . |
G | A | Y | T | R | K | Q | A | L | Y | W | A | G | A | F | A | R | E | A | G | . |
. |
. |
. |
. |
. |
. |
I | S | Y | L | E | E | P | V | S | S | E | D | R | E | G | L | R | L | L | R | D | R | G | P | G | G | V | A | I | A |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
| T | T | S |  |  |  |  |  |
| T | . | T |
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | . | . |
|
|  |  |  |
| S | S |
| T | T |
|  |  |  |  |  |  |  |  |  |  | S |
| T | T |
|  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
| . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . | . | . | . | . | . |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
173 | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | |
. | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | |
|
|
|
|
|
|
. | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . |
  |
  |   |
251 | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | N | D | F | G | M | G | Y | A | E | L | S | H | L | Q | N | I | P | F | S | Y | V | N | L | H | K | T | M | F | H | D | I | E | S | N | S | L | T | D | I | I | A | T | T | I | I | D | L | S | K | Q | L | H | I | D | V | I | A |
Query Conservation |   |
|
|
|
|
|   |
|   |   |
|
|   |   |
|   |   |
|   |   |
|   |
|
|
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|
|   |   |
|   |
|   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   | . |   |   |
|   |
|   |   |
|   |   |   |   |
|
|
|
|   |   |   |   | . | . | . | . | . | . | . |
|   |   |   |
|   |   |   |
|
|   |   |   |   |
Template Sequence |   |
A | G | E | Y | E | W | T | L | P | Q | L | H | D | L | A | G | . |
C | V | D | I | L | Q | A | D | V | T | R | C | G | G | I | T | G | L | L | R | . |
. |
. |
. |
. |
. |
. |
V | D | G | I | C | R | G | H | Q | I | P | F | S | A |
Template Known Secondary structure |   |
 |
| T | T |
|
| S |  |  |  |  |  |  |  |  | T | . | T |
| S |  |  |  |  |
| T | T | T | T | T |  |  |  |  |  | T | T | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  | T |
|
|  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
| . |
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
245 | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | |
. | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | |
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 290 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|