Job Description Q9JMT8 Confidence 35.86% Date Thu Jan 5 12:38:13 GMT 2012 Rank 290 Aligned Residues 132 % Identity 15% Template c3b0vD_ PDB info PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna Resolution 3.51 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.										.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.										.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.																					.									.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.																					.									.	.	.	.	.	.	.	.	.
Query Sequence		L	T	C	D	I	E	R	E	C	L	H	F	I	K	V	F	G	T	E	R	I	R	L	V	L	Q	F	S	.	.	.	.	.	.	.	.	.	T	K	E	E	L	Y	I	I	R	R	Y	Q	S	S	L	R	R	I	R	N	.	N	N	V	Y	L	S	L	N	.	.	.	.	.	.	.	.	.	D	F	G	M	G
Query Conservation																														.	.	.	.	.	.	.	.	.																					.									.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.																					.									.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	D	P	K	S	L	A	E	A	A	R	I	G	E	A	F	G	Y	D	E	I	N	L	N	L	G	C	P	S	E	K	A	Q	E	G	G	Y	G	A	C	L	L	L	D	L	A	R	V	R	E	I	L	K	A	X	G	E	A	V	R	V	P	V	T	V	K	X	R	L	G	L	E	G	K	E	T	Y	R	G	L
Template Known Secondary structure		S															T	T		S										S							T		G	G	G	G	G	G														T	T		S	S								S		B	T	T
Template Predicted Secondary structure
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.					.	.	.	.	.	.	.	.	300	.	.		.	.	.	.	.	.	.	310		.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.												.									.
Query SS confidence																																				.	.	.	.												.									.
Query Sequence		Y	A	E	L	S	H	L	Q	N	I	P	F	S	Y	V	N	L	H	K	T	M	F	H	D	I	E	S	N	S	L	T	D	I	I	.	.	.	.	A	T	T	I	I	D	L	S	K	Q	L	.	H	I	D	V	I	A	D	G	.	I	E	T	K	K	Q	A	G	Y	M	I	E	R	G	V	K	Y	L	K
Query Conservation																																				.	.	.	.												.									.
Alig confidence																																				.	.	.	.												.									.													.
Template Conservation																																																																									.
Template Sequence		A	Q	S	V	E	A	X	A	E	A	G	V	K	V	F	V	V	H	A	R	S	A	L	L	A	L	S	T	K	A	N	R	E	I	P	P	L	R	H	D	W	V	H	R	L	K	G	D	F	P	Q	L	T	F	V	T	N	G	G	I	R	S	L	E	E	A	L	F	H	L	K	.	R	V	D	G	V	X
Template Known Secondary structure											T	T									S		B		T	T	S		T	T	G	G	G	T	S	S															T	T	S						S	S			S									T	.	T	S	S
Template Predicted Secondary structure																																																																									.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions