Job Description Q9JMT8 Confidence 49.48% Date Thu Jan 5 12:38:13 GMT 2012 Rank 251 Aligned Residues 188 % Identity 17% Template c2fptA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:dihydroorotate dehydrogenase, mitochondrial; PDBTitle: dual binding mode of a novel series of dhodh inhibitors Resolution 2.40 Å

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		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.													.	.	.	.	.	230
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	S	Y	L	F	G	H	I	N	K	L	F	S	P	I	K	N	N	L	P	H	G	F	F	I	T	I	N	I	N	P	E	D	I	L	T	C	D	I	E	R	E	C	L	H	F	I	K	V	F	G	T	E	R	I	R	L	V	L	Q	F	S	.	.	.	.	.	.	.	.	.	.	.	.	T	K	E	E	L	Y
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																					.											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																					.
Template Sequence		L	S	V	V	E	H	R	L	R	A	R	Q	Q	K	Q	A	K	L	T	E	D	G	L	P	L	G	V	N	L	G	K	N	K	T	S	V	D	A	A	E	D	Y	A	E	G	V	R	V	L	G	P	.	L	A	D	Y	L	V	V	N	V	S	S	P	N	T	A	G	L	R	S	L	Q	G	K	A	E	L	R	R
Template Known Secondary structure											T	T										T	T											T	T		S														G	G	.	G		S									T	T	S	T	T	S	G	G	G	G	S
Template Predicted Secondary structure																																																					.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260							.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.															.	.	.	.	.
Predicted Secondary structure																.																	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.																	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	I	R	R	Y	Q	S	S	L	R	R	I	R	N	.	N	N	V	Y	L	S	L	N	D	F	G	M	G	Y	A	E	.	.	.	.	.	.	L	S	H	L	Q	N	I	P	F	S	Y	V	N	L	H	K	T	M	F	H	D	I	E	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	S	L	T	D
Query Conservation																.																	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.									.								.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.
Template Sequence		L	L	T	K	V	L	Q	E	R	D	G	L	R	R	V	H	R	P	A	V	L	V	K	.	I	A	P	D	L	T	S	Q	D	K	E	D	I	A	S	V	V	K	E	L	G	I	D	G	L	I	V	T	N	T	T	V	S	R	P	A	G	L	Q	G	A	L	R	S	E	T	G	G	L	S	G	K	P	L	R	D
Template Known Secondary structure												T	S		G	G	G								.			S																		T										B	S				T	T				T	T	T	T	S	S	S
Template Predicted Secondary structure																									.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.			.	.	.	.	.	.	310		.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.				330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure																.	.								.																				.	.	.
Query SS confidence																.	.								.																				.	.	.
Query Sequence		I	I	A	T	T	I	I	D	L	S	K	Q	L	H	.	.	I	D	V	I	A	D	G	.	I	E	T	K	K	Q	A	G	Y	M	I	E	R	G	V	K	Y	L	K	.	.	.	G	I	A	L	S	S	P	L	P	A	D	A	F	V	R	K	L	L	A	S	L	K	Q
Query Conservation																.	.								.																				.	.	.
Alig confidence																.	.								.																				.	.	.
Template Conservation
Template Sequence		L	S	T	Q	T	I	R	E	M	Y	A	L	T	Q	G	R	V	P	I	I	G	V	G	G	V	S	S	G	Q	D	A	L	E	K	I	R	A	G	A	S	L	V	Q	L	Y	T	A	L	T	F	W	G	P	P	V	V	G	K	V	K	R	E	L	E	A	L	L	K	E
Template Known Secondary structure														T	T	T		S						S	S			S											T		S					S								T
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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