Phyre 2 alignment of P10441 with d1pn3a

Job Description P10441
Confidence 99.82% Date Thu Jan 5 11:32:17 GMT 2012

Rank 34 Aligned Residues 346

% Identity 14% Template d1pn3a_

SCOP info UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase Gtf glycosyltransferase

Resolution 2.80

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.						.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.																						.	.										.	.	.	.	.
Query SS confidence																	.																						.	.										.	.	.	.	.
Query Sequence	L	T	I	A	L	V	A	G	E	T	S	G	D	I	L	G	.	A	G	L	I	R	A	L	K	E	H	V	P	N	A	R	F	V	G	V	A	G	.	.	P	R	M	Q	A	E	G	C	E	.	.	.	.	.	A	W	Y	E	M	E	E	L	A	V	M	G	I	V	E	V	L	G	R	L	R	R	L	L	H	I
Query Conservation																	.																						.	.										.	.	.	.	.
Alig confidence																	.																						.	.										.	.	.	.	.
Template Conservation
Template Sequence	M	R	V	L	I	T	G	C	G	S	R	G	D	T	E	P	L	V	A	L	A	A	R	L	R	E	L	G	A	D	A	R	M	C	L	P	P	D	Y	V	E	R	C	A	E	V	G	V	P	M	V	P	V	G	R	A	V	R	A	G	A	R	E	P	G	E	L	P	P	G	A	A	E	V	V	T	E	V	V	A
Template Known Secondary structure									S	S																	T	T									G	G	G								T							S	S		S	S	G	G	G	S		T	T				T	T		G	G	G
Template Predicted Secondary structure
Template SS confidence
	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80

	79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	A	D	L	T	K	R	F	G	E	L	K	P	D	V	F	V	G	I	D	A	P	D	F	N	I	T	L	E	G	N	L	K	K	Q	G	I	K	T	I	H	Y	V	S	P	S	V	W	A	W	R	Q	K	R	V	F	K	I	G	R	A	T	D	L	V	L	A	F	L	P	F	E	K	A	F	Y	D	K	Y	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence	E	W	F	D	K	V	P	A	A	I	E	G	C	D	A	V	V	T	T	G	L	L	P	A	A	V	A	V	R	S	M	A	E	K	L	G	I	P	Y	R	Y	T	V	L	S	P	D	H	L	P	S	E	Q	S	Q	A	E	R	D	M	Y	N	Q	G	A	D	R	L	F	G	D	A	V	N	S	H	R	A	S	I
Template Known Secondary structure											T	T		S																						T								S	S	G	G	G	S	G	G	G	S																T										T	T
Template Predicted Secondary structure
Template SS confidence
	81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160

	159	160	.	.	.	.																														.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	V	P	C	R	F	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	H	T	M	A	D	A	M	P	L	D	P	D	K	N	A	A	R	D	V	L	G	I	P	H	D	A	H	C	L	A	L	L	P	G	S	R	G	A	E	V	E	M	L	S
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	G	L	P	P	V	E	H	L	Y	D	Y	G	Y	T	D	Q	P	W	L	A	A	D	P	V	L	S	P	L	R	P	T	D	L	G	T	V	Q	T	G	A	W	I	L	P	D	E	R	P	L	S	A	E	L	E	A	F	L	A	A	G	S	T	P	V	Y	V	G	F	G	S	S	S	R	P	A	T	A	D	A	A
Template Known Secondary structure	S														S	S					S		T	T	T	S				T	T			S			B																				T	T	S	S	S								T	T			S	T
Template Predicted Secondary structure
Template SS confidence
	161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240

	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.		.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence	A	D	F	L	K	T	A	Q	L	L	R	Q	T	Y	P	D	L	E	I	V	V	P	L	V	N	A	K	R	R	E	Q	F	E	R	I	K	A	E	V	A	P	D	L	S	V	H	L	L	D	G	M	G	R	E	A	M	V	A	S	D	A	A	L	L	.	A	S	G	T	A	A	L	E	C	M	L	A	K	C	P
Query Conservation																																																																	.
Alig confidence										.	.	.	.	.																	.	.	.	.	.	.	.																												.
Template Conservation										.	.	.	.	.																	.	.	.	.	.	.	.
Template Sequence	K	M	A	I	K	A	V	R	A	.	.	.	.	.	S	G	R	R	I	V	L	S	R	G	W	A	D	L	V	L	.	.	.	.	.	.	.	P	D	D	G	A	D	C	F	V	V	G	E	V	N	L	Q	E	L	F	G	R	V	A	A	A	I	H	H	D	S	A	G	T	T	L	L	A	M	R	A	G	I	P
Template Known Secondary structure										.	.	.	.	.	T	T								T	T	T	T				.	.	.	.	.	.	.	S	S			T	T					S	S								T	T	S	S						S												T
Template Predicted Secondary structure										.	.	.	.	.																	.	.	.	.	.	.	.
Template SS confidence
	241	.	.	.	.	.	.	.	.						250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.								.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.

	289	290	.	.	.	.	.	.	.	.				.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure											.	.	.
Query SS confidence											.	.	.
Query Sequence	M	V	V	G	Y	R	M	K	P	F	.	.	.	T	F	W	L	A	K	R	L	V	K	T	D	Y	V	S	L	P	N	L	L	A	G	R	E	L	V	K	E	L	L	Q	E	E	C	E	P	Q	K	L	A	A	A	L	L	P	L	L	A	N	G	K	T	S	H	A	M	H	D	T	F	R	E	L	H	Q	Q	I
Query Conservation											.	.	.
Alig confidence											.	.	.															.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Template Sequence	Q	I	V	V	R	R	V	V	D	N	V	V	E	Q	A	Y	H	A	D	R	V	A	E	L	G	V	G	.	.	.	.	.	.	.	.	.	.	.	.	V	A	V	D	G	P	V	P	T	I	D	S	L	S	A	A	L	D	T	A	L	A	P	E	.	.	.	.	.	I	R	A	R	A	T	T	V	A	D	T	I
Template Known Secondary structure						S	S			B	T	T	B												T	S		.	.	.	.	.	.	.	.	.	.	.	.						S	S														T	S	T	T	.	.	.	.	.									G	G	G	S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Template SS confidence
	309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.													.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.						360	.	.	.	.	.	.	.	.	.	370	.

	366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	C	N	A	D	E	Q	A	A	Q	A	V	L	E	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence	R	A	D	G	T	T	V	A	A	Q	L	L	F	D	A	V
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
	372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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