Job Description P10441 Confidence 99.94% Date Thu Jan 5 11:32:17 GMT 2012 Rank 19 Aligned Residues 343 % Identity 11% Template c3oy2A_ PDB info PDB header:viral protein,transferase Chain: A: PDB Molecule:glycosyltransferase b736l; PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a Resolution 2.31 Å

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		7	.	.	10	.	.	.				.	.	.	.	.		.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure									.	.	.						.
Query SS confidence									.	.	.						.
Query Sequence		L	T	I	A	L	V	A	.	.	.	G	E	T	S	G	.	D	I	L	G	A	G	L	I	R	A	L	K	E	H	V	P	N	A	R	F	V	G	V	A	G	P	R	M	Q	A	E	G	C	E	A	W	Y	E	M	E	E	L	A	V	M	G	I	V	E	V	L	G	R	L	R	R	L	L	H	I	R	A	D	L
Query Conservation									.	.	.						.
Alig confidence									.	.	.						.												.																														.	.	.	.	.	.
Template Conservation																													.																														.	.	.	.	.	.
Template Sequence		M	K	L	I	I	V	G	A	H	S	S	V	P	S	G	Y	G	R	V	M	R	A	I	V	P	R	I	.	S	K	A	H	E	V	I	V	F	G	I	H	A	F	G	R	S	V	H	A	N	I	E	E	F	D	A	Q	T	.	.	.	.	.	.	A	E	H	V	R	G	L	N	E	Q	G	F	Y	Y	S	G	L
Template Known Secondary structure											T	T			S														.	T	T	T	S								S			S			S		S	S	S								.	.	.	.	.	.					T	T			S	T	T
Template Predicted Secondary structure																													.																														.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.							.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.				.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.
Query SS confidence																																				.	.	.
Query Sequence		T	K	R	F	G	E	L	K	P	D	V	F	V	G	I	D	A	P	D	F	N	I	T	L	E	G	N	L	K	K	Q	G	I	K	.	.	.	T	I	H	Y	V	S	P	S	V	W	A	W	R	Q	K	R	V	F	K	I	G	R	A	T	D	L	V	L	A	F	L	P	F	E	K	A	F	Y	D	K	Y	N	V
Query Conservation																																				.	.	.
Alig confidence																																				.	.	.
Template Conservation
Template Sequence		S	E	F	I	D	V	H	K	P	D	I	V	M	I	Y	N	D	P	I	V	I	G	N	Y	L	L	A	M	G	K	C	S	H	R	T	K	I	V	L	Y	V	D	L	V	S	K	N	I	R	E	N	L	W	W	I	F	S	H	P	K	V	V	G	V	M	A	M	S	K	C	W	I	S	D	I	C	N	Y	G	C
Template Known Secondary structure											S																		G	G	G			S												S	B	S			G	G	G	G	G	G	G	G		T	T							S	S	T									T	T
Template Predicted Secondary structure
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.			.	.	.	.	.	.
Predicted Secondary structure																																																																										.	.
Query SS confidence																																																																										.	.
Query Sequence		P	C	R	F	I	G	H	T	M	A	D	A	M	P	L	D	P	D	K	N	A	A	R	D	V	L	G	I	P	H	D	A	H	C	L	A	L	L	P	G	S	R	G	A	E	V	E	M	L	S	A	D	F	L	K	T	A	Q	L	L	R	Q	T	Y	P	D	L	E	I	V	V	P	.	.	L	V	N	A	K	R
Query Conservation																																																																										.	.
Alig confidence																										.	.	.	.																																													.	.
Template Conservation																										.	.	.	.
Template Sequence		K	V	P	I	N	I	V	S	H	F	V	D	T	K	T	I	Y	D	A	R	K	L	V	G	.	.	.	.	L	S	E	Y	N	D	D	V	L	F	L	N	M	N	R	N	T	A	R	K	R	L	D	I	Y	V	L	A	A	A	R	F	I	S	K	Y	P	D	A	K	V	R	F	L	C	N	S	H	H	E	S	K
Template Known Secondary structure			S															T	T					T	T	.	.	.	.		G	G	G	T	T	S							S		S	S	G	G	G	T																T	T											T	T		S
Template Predicted Secondary structure																										.	.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.					.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.															.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280						.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.
Query Sequence		R	E	Q	F	E	R	I	K	A	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	P	D	L	S	V	H	L	L	D	G	M	G	R	E	A	M	V	A	S	D	A	A	L	L	A	S	G	T	A	A	L	.	.	.	.	.	E	C	M	L	A	K	C	P	M	V	V	G	Y	R	M	K	P	F
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.									.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		F	D	L	H	S	I	A	L	R	E	L	V	A	S	G	V	D	N	V	F	T	H	L	N	K	I	M	I	N	R	T	V	L	T	D	E	R	V	D	M	M	Y	N	A	C	D	V	I	V	N	C	S	S	G	E	G	F	G	L	C	S	A	E	G	A	V	L	G	K	P	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																T		S							T	T						S															S							S			S	S									T	T	T			.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.																		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	F	W	L	A	K	R	L	V	K	T	D	Y	V	S	L	P	N	L	L	A	G	R	E	L	V	K	E	L	L	Q	E	E	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	P	Q	K	L	A	A	A	L	L	P	L	L	A	N	G	K	T	S	H	A	M	H	D	T	F	R	E	L
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																		.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation		.	.	.	.	.	.	.																		.	.																																													.
Template Sequence		.	.	.	.	.	.	.	L	I	I	S	A	V	G	G	A	D	D	Y	F	S	G	D	C	.	.	V	Y	K	I	K	P	S	A	W	I	S	V	D	D	R	D	G	I	G	G	I	E	G	I	I	D	V	D	D	L	V	E	A	F	T	F	F	K	D	E	K	N	R	K	.	E	Y	G	K	R	V	Q	D	F
Template Known Secondary structure		.	.	.	.	.	.	.													S		T	T	T	.	.	S												T	T	T		S	S																			T	T	S						.
Template Predicted Secondary structure		.	.	.	.	.	.	.																		.	.																																													.
Template SS confidence
									300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.			.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360		.	.	.	.	.	.	.	.	.
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	Q	Q	I	R	C	N	A	D	E	Q	A	A	Q	A	V	L	E	L	A	Q
Query Conservation
Alig confidence						.	.
Template Conservation						.	.
Template Sequence		V	K	T	K	.	.	P	T	W	D	D	I	S	S	D	I	I	D	F	F	N
Template Known Secondary structure			T	T	S	.	.
Template Predicted Secondary structure						.	.
Template SS confidence
		370	.	.	.			.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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