Job Description P10441 Confidence 99.93% Date Thu Jan 5 11:32:17 GMT 2012 Rank 21 Aligned Residues 312 % Identity 13% Template c2xcuC_ PDB info PDB header:transferase Chain: C: PDB Molecule:3-deoxy-d-manno-2-octulosonic acid transferase; PDBTitle: membrane-embedded monofunctional glycosyltransferase waaa of aquifex2 aeolicus, comlex with cmp Resolution 2.42 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																					.	.
Query SS confidence																																					.	.
Query Sequence		I	A	L	V	A	G	E	T	S	G	D	I	L	G	A	G	L	I	R	A	L	K	E	H	V	P	N	A	R	F	V	G	V	A	G	.	.	P	R	M	Q	A	E	G	C	E	A	W	Y	E	M	E	E	L	A	V	M	G	I	V	E	V	L	G	R	L	R	R	L	L	H	I	R	A	D	L	T	K	R	F
Query Conservation																																					.	.
Alig confidence																							.														.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	W	V	H	T	A	S	I	G	E	F	N	T	F	L	P	I	L	K	E	L	.	K	R	E	H	R	I	L	L	T	Y	F	S	P	R	A	R	E	Y	L	K	T	K	S	D	F	Y	D	C	L	H	P	L	P	L	D	N	P	F	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	R	F	E
Template Known Secondary structure							S	S															.	T	T	T	S							S		T	T							T	T	G	G	G		S								S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																							.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.															.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	L	K	P	D	V	F	V	G	I	D	A	P	D	F	N	I	T	L	E	G	N	L	K	K	Q	G	I	K	T	I	H	Y	V	S	P	S	V	W	A	W	R	Q	K	R	V	F	K	I	G	R	A	T	D	L	V	L	A	F	L	P	F	E	K	A	F	Y	D	K	Y	N	V	P	C	R	F	I	G	H
Query Conservation
Alig confidence																						.	.	.	.													.	.	.
Template Conservation																						.	.	.	.													.	.	.
Template Sequence		E	L	S	K	P	K	A	L	I	V	V	E	R	E	F	W	P	S	L	I	.	.	.	.	I	F	T	K	V	P	K	I	L	V	N	A	.	.	.	Y	A	K	G	S	L	I	E	K	I	L	S	K	K	F	D	L	I	I	M	R	T	Q	E	D	V	E	K	F	K	T	F	G	A	K	R	V	F	S	C	G
Template Known Secondary structure							S						S									.	.	.	.					S								.	.	.												G	G	G		S					S	S									T	T	T		S	S
Template Predicted Secondary structure																						.	.	.	.													.	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.					.	.	.	110	.	.	.	.	.	.	.	.				.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	M	A	D	A	M	P	L	D	P	D	K	N	A	A	R	D	V	L	G	I	P	H	D	A	H	C	L	A	L	L	P	G	S	R	G	A	E	V	E	M	L	S	A	D	F	L	K	T	A	Q	L	L	R	Q	T	Y	P	D	L	E	I	V	V	P	L	V	N	A	K	R	R	E	Q	F	E	R	I	K	A
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	F	I	C	Q	K	G	K	G	I	K	L	K	G	E	F	I	V	A	G	S	I	H	T	G	E	V	E	I	I	L	K	A	F	K	E	I	K	K	T	Y	S	S	L	K	L	I	L	V	P	R	H	I	E	N	A	K	I	F	E	K	K	A	R
Template Known Secondary structure			G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G											S	S										G	G	G													T	T		T	T								S	S	G	G	G
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		160	.															.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		247	.	.	250											.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280						.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.																					.											.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.																					.											.	.	.	.	.
Query Sequence		E	V	A	P	.	.	.	.	.	.	.	.	.	.	D	L	S	V	H	L	L	D	G	M	G	R	E	A	M	V	A	S	D	A	.	A	L	L	A	S	G	T	A	A	L	.	.	.	.	.	E	C	M	L	A	K	C	P	M	V	V	G	Y	R	M	K	P	F	T	F	W	L	A	K	R	L	V	K	T	D
Query Conservation						.	.	.	.	.	.	.	.	.	.																					.											.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.																					.											.	.	.	.	.																										.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		D	F	G	F	K	T	S	F	F	E	N	L	E	G	D	V	I	L	V	D	R	F	G	I	L	K	E	L	Y	P	V	G	K	I	A	I	V	G	G	T	F	V	N	I	G	G	H	N	L	L	E	P	T	C	W	G	I	P	V	I	Y	G	P	Y	T	H	K	V	N	D	L	K	E	F	L	.	.	.	.	.
Template Known Secondary structure			T	T						T	T				S	S							T	T						G	G	G								S	S	S	S	T	T											T	T							S			T	T	S								.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	V	S	L	P	N	L	L	A	G	R	E	L	V	K	E	L	L	Q	E	E	C	E	P	Q	K	L	A	A	A	L	L	P	L	L	A	N	G	K	T	S	H	A	M	H	D	T	F	R	E	L	H	Q	Q	I	R	C	N	A	D	E	Q	A	A	Q	A	V	L	E	L	A	Q
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																												.																.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																												.																.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	E	K	E	G	A	G	F	E	V	K	N	E	T	E	L	V	T	K	L	T	E	L	L	S	V	K	K	.	E	I	K	V	E	E	K	S	R	E	I	K	G	C	Y	.	.	.	.	.	.	.	.	L	E	K	L	R	E	F	L	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.			T	T							S														S			.																.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																												.																.	.	.	.	.	.	.	.
Template SS confidence
														301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.									.	.	.	.	.	.	.	350	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions